Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2202 ATGGCAAGATATTTGCCCTGTTCCTTGCTTCTAGGGGTGGCTTGTTTCATTGTAATTGGTGCTTTAGGGGAGAACTTCCCTCCTAAGAGTGGCAACTACCATGAATCAATACAAAGACTTCAAACATTTAAGGCCTCTCTAACAAGACATGATTCCATTGCTTCAGCACCATCTTACATCTCACCCTCTCCTAGTCCTTCTCCTTCTCCTCTCTCATTTCAGGGTGTGAACAATGCTCGTGTATATTATGTGACATCTTATGGTGCTGATCCAACAGGCAATTCAGATAGCACTGAAGCAATCATTGCAGCCATAGCAGATGCAACAAAGGGTCCAAGTGAAGGACATTTGATGCAAGGCATCAGAGACCTTGGAGGTGCCCAGATTAATCTTGAGGGTGGTGATTACATGATTAGCCGTCCATTGCAGTTGCCTGAGGCTGGAGTGGGCAACCTTATGATACATGGGGGAACTATAAGAGCCTCAAATGATTTTCCAGCAGATGCCTATATCATTGATTTGTCAACCTCTTCTAATGGGAACAAGGAAGGAAACAGGAAGAGTTCCTCTTCATCATCCTATAATTTTGAGTTCATAACTATGAAGGACCTCTTGTTGGACTCAAACTTCAGAGGTGGAGGCATTTCTGTCATAAACTCACTAAGGACTAACATAGACAATTGTTACATCACACATTTCACCACCAATGGAATTTTAGTCCAAAGTGGCCACGAAACCTACATTAGAAACTCCTTCCTTGGCCAGCACATAACTGCTGGTGGGGATAAAAATGAAAGGAACTTCTCAGGCACTGGAATAACCCTTCAGGGCAATGACAATGCTGTCACAGATGTGGTAATTTTCTCTGCTGCTATAGGAATAATGGTTACTGGTCAAGCCAACACTTTTTCTGGTGTACATTGTTACAATAAGGCCACTGGCTTTGGTGGTACTGGAATTTATTTGAAACTACCCGGTTTGACACAAACTAGGATTGTGAATTCTTACATGGATTACACAAGTATTGTAGCAGAAGATCCGGTTCAACTTCATATCTCTAGTAGTTTCTTCCTTGGTGATGCAAATATTGTCCTGAAGTCTAAGAATGGAGTTGTAAATGGTGTTACTGTTGTTGATAACATGTTCTCAGGTTCAAACAATGGGGTAGATATTGTTCATCTGGACCAATCAAGTACTCATTTTCATCAAATTGATCAAGTTATTGTTGACAGGAACATTGTGAGGGGAATGAAGTTAAAGGCTACAGTTGCAAAAATGTCTATGCAAGGGAATGGAACCTCCTGGACCCTTGATTTTAACAATATTTTGCTTTTTCCTAACCGTATAAAAGATGTTCAATACTCTGTAAGTTCCACAGGCAGCACCTTCCCAAATCATGCTCTGAGGAATGTGTCTCAGAATCGCGTTGTGATTGAAACAAACGAAGCAGTAACTGCTAATGTTTTTGTTACAGCGGATCAAAGTGTGGTAAGTTGA 1497 0.4115 MARYLPCSLLLGVACFIVIGALGENFPPKSGNYHESIQRLQTFKASLTRHDSIASAPSYISPSPSPSPSPLSFQGVNNARVYYVTSYGADPTGNSDSTEAIIAAIADATKGPSEGHLMQGIRDLGGAQINLEGGDYMISRPLQLPEAGVGNLMIHGGTIRASNDFPADAYIIDLSTSSNGNKEGNRKSSSSSSYNFEFITMKDLLLDSNFRGGGISVINSLRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERNFSGTGITLQGNDNAVTDVVIFSAAIGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSKNGVVNGVTVVDNMFSGSNNGVDIVHLDQSSTHFHQIDQVIVDRNIVRGMKLKATVAKMSMQGNGTSWTLDFNNILLFPNRIKDVQYSVSSTGSTFPNHALRNVSQNRVVIETNEAVTANVFVTADQSVVS* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2202 498 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 9 497 - -
Apr1g2202 498 Gene3D - 82 498 IPR012334 -
Apr1g2202 498 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Apr1g2202 498 PANTHER POLYGALACTURONASE QRT3 9 497 IPR039279 GO:0004650
Apr1g2202 498 SMART pbh1 277 298 IPR006626 -
Apr1g2202 498 SMART pbh1 372 393 IPR006626 -
Apr1g2202 498 SMART pbh1 220 242 IPR006626 -
Apr1g2202 498 Pfam Pectate lyase superfamily protein 84 314 IPR024535 -
Apr1g2202 498 SUPERFAMILY Pectin lyase-like 80 473 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2202 Apr-Chr1 31443090 31445395 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2202 - - gmx:100804107 769.229