Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2192 ATGGCTCTCACGCTCTTTCGATTGTTCCTTTTGCTCCTTTTTACCTTTGTTGATGGACGCTTCGTAGTGGAGAAGAGTAGCATCGCGCTTCTCTCACCGCACAAGCTCAGAACAAAGCGCGATGGCGCTATCGGTAATTTTGGCCTTCCAGATTATGGAGGCTTCATCGTTGGCTCCGTCGTTTATCCTGATAAAGACTCTCACGGTTGCAAAGTCTTCGATGGCGATAAGCCTTTCAAGTTTCGCTCTAATCGTCCAACTATTCTTCTCCTTGATCGTGGAGAGTGTTATTTTGCCTTGAAAGTTTGGCATGCCCAACTGGCTGGAGCTGCAGCTGTTTTGGTGACTGATAGCATTGAGGAGTCTCTGATAACCATGGATTCTCCTGAGGAGAGCTCTGATGCTGATGGATACATAGAGAAGATTGAAATTCCATCGGCTCTAATAGAGAAATCCTTTGGTGATACGATAAAGGAATCTTTAAATAACAAAGATGAAGTTTTGCTTAGAATAGACTGGAGAGAGTCAGTTCCTCACCCTGATAACAGAGTTGAGTATGAGTTCTGGACCAACAGCAATGATGAATGTGGAGCTCGTTGTGACGAGCAGATGAATTTTGTGAAGAATTTTAAGGGTCATGCTCAGATTCTTGAGAGGGGTGGTTATACCTTATTCACTCCACACTATATAACTTGGTTTTGTCCTCAGCCCTTCGTTCTTAGCAGTCAGTGCAAGTCTCAATGTATTAACCGCGGGAGATATTGTGCCCCAGATCCAGAGAAAGATTTTGGAGAGGGATATGAAGGGAAGGATGTCGTATATGAAAATTTGAGGCAGCTGTGTGTCCATAGAGTTGCCAATGAGAGCAACCGTTCGTGGGTCTGGTGGGATTATGTGACGGATTTCCATGTCAGATGTTCTATGAAGGAGAAAAGATACAGCAAAGATTGTGCTGATGATGTCATGAAATCTTTAGATCTGCCTATTGAGAAAATTAAGAAATGCATGGGTGATCCTGAAGCGGACGTGGAGAATGAAGTGCTAAAGAGTGAGCAACAAGTTCAGATTGGGAGAGGATCTCGTGGTGATGTCACTATCTTGCCAACATTGGTTATAAACAATGTCCAGTACAGAGGGAAATTGGAGAGAACTGCTGTACTGAAGGCAATATGTTCTGGATTTAAGGAGACTACTGAACCTTCGGTTTGTCTAAGCGGAGATATTGAGACTAACGAGTGTCTTGAAAGAAATGGAGGATGTTGGCAAGACAAATATGCTAACATAACTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGCGAGTGCCCTGTTGTTAATGGGGTTCAGTACAAGGGTGATGGTTATACATCATGTGTGGCTTTTGGGCCTGCAAGGTGTTCTATAAACAATGGTGGGTGTTGGTCGGAAACAAGAAATGGAGTAACTTTCTCTGCATGCTCAGAGTCCCAGGTAAATGGCTGTCAGTGCCCAGTTGGGTTTCGTGGGGATGGTCATAAATGTGAAGATGTTGATGAATGTAAGGACCGAAGTGCTTGTCAGTGTGATGGCTGCAGCTGCAAGGACACTTGGGGTGGTTACGAATGTAAATGCAAGGGAAATCTTCTATATATAAAGGAACAAGATGTTTGTATTGAAAGAAGCGGTTCAAGATTTGGACGATTCCTTGCTTTTGTGGTCATAGCAGTTGTTGTGGGTGCTGGTCTAGCTGGTTACGTGTTTTACAAATATAGGCTCAGGTCTTACATGGACTCGGAGATCATGGCTATCATGTCACAGTACATGCCACTAGACCAGCAAAATAATGTAGTTCACGCCGAAGCTCAGCCTTTACGACAACAAGGCACAGTGTAA 1872 0.4391 MALTLFRLFLLLLFTFVDGRFVVEKSSIALLSPHKLRTKRDGAIGNFGLPDYGGFIVGSVVYPDKDSHGCKVFDGDKPFKFRSNRPTILLLDRGECYFALKVWHAQLAGAAAVLVTDSIEESLITMDSPEESSDADGYIEKIEIPSALIEKSFGDTIKESLNNKDEVLLRIDWRESVPHPDNRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPQPFVLSSQCKSQCINRGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHVRCSMKEKRYSKDCADDVMKSLDLPIEKIKKCMGDPEADVENEVLKSEQQVQIGRGSRGDVTILPTLVINNVQYRGKLERTAVLKAICSGFKETTEPSVCLSGDIETNECLERNGGCWQDKYANITACKDTFRGRVCECPVVNGVQYKGDGYTSCVAFGPARCSINNGGCWSETRNGVTFSACSESQVNGCQCPVGFRGDGHKCEDVDECKDRSACQCDGCSCKDTWGGYECKCKGNLLYIKEQDVCIERSGSRFGRFLAFVVIAVVVGAGLAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAEAQPLRQQGTV* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2192 623 SUPERFAMILY PA domain 87 121 IPR046450 -
Apr1g2192 623 SMART egfca_6 509 551 IPR001881 GO:0005509
Apr1g2192 623 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 7 599 - -
Apr1g2192 623 CDD EGF_CA 509 538 - -
Apr1g2192 623 ProSitePatterns Calcium-binding EGF-like domain signature. 509 535 IPR018097 GO:0005509
Apr1g2192 623 Gene3D Laminin 462 551 - -
Apr1g2192 623 Pfam PA domain 58 157 IPR003137 -
Apr1g2192 623 Gene3D - 18 180 - -
Apr1g2192 623 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 7 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2192 Apr-Chr1 31369625 31375673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2192 2 620 Miscellaneous Gene Families AT1G30900 71.082 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2192 - - gmx:100790467 1196.42