Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2188 ATGCCGCAAGCACGAGAGCTTCCAGGGTTCTACTATGACCCTGAGAAGAACAGGTATTTCCCCATCAAAGGTCCAATTCCTGGTTCTTCTTCTAAGACTAAAAACCCTCCCCTGAAGTCACCTCAAATCCCTTCCAATCAGGAAAGGAGTAGGAGTTGTTGTAGGAAGCTTAGAAACACCACTTCTAAGTTGCTTCTTGCTAGGGAGTTAGATGGTCATCATGTCATTGCTTCTCGATATTGCAAGAGTAGCTTCACTGAGGAATTCCGGAAAATACAAGCGTCTAAACCTACAGTGTGGAAATATCGGGGAACTGATAAGATAGGTATTAGTGCTCTGGAACATTTACGTGTTGATGTGCAGACGTTAGAGGGTCAATCTGAAACTGATGTTTTATTGACGGGCAGCATAAATGGCTCGTTGAGTTTTTCTGAAGTTGGAAGGTTTGGACAATATTTTGATGGTGGGATAAAATGGATGCCTGATTGTATGAAGAATTATGTTAAAGAGAAAACAATTGAGCATAATGTGGTGCCTGGGCCGGTTTTCAGACCTAATGGAGCTTCACTGCTTATGTCCTCCAGAATTTCTTGTATAAGATTGGGTCCAAAATGCACTTCTCATGCTGTGAATGATGGTCCTACAGTTGGACATGCATTATTCACTACTTTGGGATCGGAGACATCTGGTGGATCACTTTATACTCTTGGTCTTGTTGAACCATTAGATCTTGGGCCAGATATACTGAACACATGGAGCAGACTAGAGGAAATTGCTTCTTTCAGGTGTACACTTTGGACTGCAGAATATGATTATAATAATCATCGGGCTATAATAGGTACAAATCTGGGAGGTGCTTCAGTGGATCTAGAAACTGGGATGACATCATGGTTTTTGCGTTGTAAAAGTGATGTTTTTGCACAACAGATTGTTAATTCAGGAAATGTGATTTTATGTGGGCTCAGAAATGGGGCAATTGTCACTGTAGATTTTCGTGAGAAAAGAGAAAGGTTCTCTGGTAGACTTATTACACATCGAATACCTTATACACCTTCAGATAAGAAAGTTGGAGGTTCTAATAAAGAATGGTTCAAGCTCACTGGAGACATATATCCTTCTCATACCATTAGGATGCCTTCATCTATATCCTGTTTGGTGTCACTTCAGTTTGATGATCAGTACTTCTTGGCAAGCTCAATGGATGGATCGATGAGGCTCTATGATCATCGACTACTCCATAGGGGTGCTGTTCAATCTTATGAAGGCCATGTGAATTCTCATACTTTCATACAGCTTGGTGTTGATCCAGCTGAGAGATTTGTTATGTCAGGTGGAGAGGATTGCAAGCTACGTTTGTGGAGCATCAAGTCTGGTGAACTGCTTTTTGAGGATAAGTTCGCCGATTCAGTTCTCTCCACTGTGTGCTATAGAACATATAAAAGTGGTTTTAAAGCAGAGGAGGAAAACAGATACAAGCATGACTCTTCTTTGGGTGCATGGCTTGGATCACACCAAGGACTATTTTATATGAACTGGTTATGA 1542 0.4118 MPQARELPGFYYDPEKNRYFPIKGPIPGSSSKTKNPPLKSPQIPSNQERSRSCCRKLRNTTSKLLLARELDGHHVIASRYCKSSFTEEFRKIQASKPTVWKYRGTDKIGISALEHLRVDVQTLEGQSETDVLLTGSINGSLSFSEVGRFGQYFDGGIKWMPDCMKNYVKEKTIEHNVVPGPVFRPNGASLLMSSRISCIRLGPKCTSHAVNDGPTVGHALFTTLGSETSGGSLYTLGLVEPLDLGPDILNTWSRLEEIASFRCTLWTAEYDYNNHRAIIGTNLGGASVDLETGMTSWFLRCKSDVFAQQIVNSGNVILCGLRNGAIVTVDFREKRERFSGRLITHRIPYTPSDKKVGGSNKEWFKLTGDIYPSHTIRMPSSISCLVSLQFDDQYFLASSMDGSMRLYDHRLLHRGAVQSYEGHVNSHTFIQLGVDPAERFVMSGGEDCKLRLWSIKSGELLFEDKFADSVLSTVCYRTYKSGFKAEEENRYKHDSSLGAWLGSHQGLFYMNWL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2188 513 PANTHER KATANIN P80 SUBUNIT 12 511 - -
Apr1g2188 513 MobiDBLite consensus disorder prediction 1 52 - -
Apr1g2188 513 MobiDBLite consensus disorder prediction 28 50 - -
Apr1g2188 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 463 IPR001680 GO:0005515
Apr1g2188 513 SMART WD40_4 369 408 IPR001680 GO:0005515
Apr1g2188 513 SMART WD40_4 413 454 IPR001680 GO:0005515
Apr1g2188 513 Pfam WD domain, G-beta repeat 417 454 IPR001680 GO:0005515
Apr1g2188 513 SUPERFAMILY WD40 repeat-like 288 475 IPR036322 GO:0005515
Apr1g2188 513 Gene3D - 288 481 IPR015943 GO:0005515
Apr1g2188 513 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 511 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2188 383 480 Miscellaneous Gene Families AT5G08390 26.000 1.09e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2188 K11799 - gmx:100798753 860.907