Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2176 ATGGATCCAACATTTGATGTTGCTGCTTTGAATAATCCTAAAGTCACAGAGGACGATTTGAACCGTTTTAGGTATTCTGTCTATGAAATTTCCACGCAAGTTCAAAAGCTTGAGAAGCAAGTTACTGAGGTTGAACAGTTCTACCGTTCCACTGATGTTCAAGTAAATAGTGCCAAGGACAAAGGGCGGGAGAAGCATCTTGCTGGCACTAAGAAGCCACAGCATGGTGCTTCAAGTAAGGAAGCTACTCCTTCAGACACAATGCAAGAGCTCATGCGCCAGTTTTCCCTTATACTGCATCAGATGACCCAGCATAAATGGGCTTGGCCCTTCATGGAACCTGTAGATGTTGAAGGTCTTGGACTGTATGACTATTATGAGATTATTGAAAAGCCTATGGATTTCACTACGATAAAAAGAAAAATGGATGCTAAGGATGGTTCTGGTTATAAGAATGTACGGGAGATATATTCTGATGTCAGGTTGATTTTCAAGAATGCAATGAAATACAATGATGAAAAGAATGACATCCATGTTATGGCAAAGACATTGCTGGAAAAATTTGAGAAGAAATGGCTGCAGCTTTTGCCTAAAGTTGCTCGTGTGGAAAATGGACTATTAAAGGAAGAAGCACAAGTGCAGTTGGAAACACAGCTTGCTCAAAAAGCCACTTATGCCAATATGGCTAGGGATATAAACGTTGCGCTGTGTGATGTTGATTTGAACTTGAATAGACTCAAAGCAATGGTGATGGAAAAGTGCAGGAAACTATCAACTCAGGAGAAACTGGCACTTACAACTGCTCTCAGCAGACTGACTCTTGAAAACCTCACGAGAGCATTGCAAATAGTTTCTGAGAATAACCCAACCTTCCAACTTAATGTTGACGAAGTCAACCTTGACCTTGATGCCCAGAGTGACTACACTCTCTGGAGACTAAACATCTTTGTGAAAAGAGCACTGGAAGATCAGGAAAAAGCTGCCCGGGACATAGTTGTTAATGACAACGATAACATTGAAGACAAGAAAAACAACAAAAGGAAGAGATTGTGA 1053 0.4084 MDPTFDVAALNNPKVTEDDLNRFRYSVYEISTQVQKLEKQVTEVEQFYRSTDVQVNSAKDKGREKHLAGTKKPQHGASSKEATPSDTMQELMRQFSLILHQMTQHKWAWPFMEPVDVEGLGLYDYYEIIEKPMDFTTIKRKMDAKDGSGYKNVREIYSDVRLIFKNAMKYNDEKNDIHVMAKTLLEKFEKKWLQLLPKVARVENGLLKEEAQVQLETQLAQKATYANMARDINVALCDVDLNLNRLKAMVMEKCRKLSTQEKLALTTALSRLTLENLTRALQIVSENNPTFQLNVDEVNLDLDAQSDYTLWRLNIFVKRALEDQEKAARDIVVNDNDNIEDKKNNKRKRL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2176 350 Pfam Bromodomain 98 182 IPR001487 GO:0005515
Apr1g2176 350 ProSiteProfiles Bromodomain profile. 103 178 IPR001487 GO:0005515
Apr1g2176 350 MobiDBLite consensus disorder prediction 55 85 - -
Apr1g2176 350 ProSiteProfiles NET domain profile. 247 328 IPR027353 -
Apr1g2176 350 Coils Coil 336 350 - -
Apr1g2176 350 PRINTS Bromodomain signature 106 119 IPR001487 GO:0005515
Apr1g2176 350 PRINTS Bromodomain signature 122 138 IPR001487 GO:0005515
Apr1g2176 350 PRINTS Bromodomain signature 159 178 IPR001487 GO:0005515
Apr1g2176 350 MobiDBLite consensus disorder prediction 56 71 - -
Apr1g2176 350 Gene3D - 50 216 IPR036427 GO:0005515
Apr1g2176 350 SUPERFAMILY Bromodomain 74 199 IPR036427 GO:0005515
Apr1g2176 350 Pfam Bromodomain extra-terminal - transcription regulation 256 318 IPR027353 -
Apr1g2176 350 Gene3D - 251 327 IPR038336 -
Apr1g2176 350 PANTHER TRANSCRIPTION FACTOR GTE1-LIKE ISOFORM X1 10 348 IPR017413 GO:0005634|GO:0006355
Apr1g2176 350 PANTHER OSJNBA0053K19.4 PROTEIN 10 348 - -
Apr1g2176 350 SMART bromo_6 84 197 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2176 Apr-Chr1 31227492 31233252 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2176 - - gmx:100795037 442.195