Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2158 ATGAGTCAGGAATCGTTCATATATAGCTTCGTGGCTCGTGGGACAATGGTGTTAGCAGAGTACACAGAGTTCACTGGGAACTTTCCTGCCATTGCAGCTCAGTGTCTTCAGAAACTTCCCTCTTCCAACAACAAGTTCACCTACAACTGTGATCACCACACCTTCAATTTCCTTGTCGAAGATGGTTATGGTAATGTTCTTTTTTCTCTTATATCTTACTGTGTTGTTGCCAAGGAATCTGTTGGCAAGCAGATATCTATTGCTTTCCTTGAACGTGTCAAAGCTGACTTTAAGAAAAGATATGGTGGTGGAAAAGCAGATACAGCTGTTGCCAAGAGTCTGAACAAGGAATTTGGACCAGTTATGAAAGAGCACATGAAGTATATCATTGATCATGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAAAGTATCATGTTAGAGAATATAGACAAGGCTATCGATAGAGGAGAGAATCTAACTATTCTTGCAGACAAGACAGAGACATTGCGCTCACAGGCTCAAGATTTCAGAAAGCAAGGAACACAAGTCCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTTGGAATTTTGTTGTTTTTGGTCCTGGTTATCTGGCTTTCTATTTGTGGTGGATTTGATTGTACAAACTAG 690 0.3957 MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYGNVLFSLISYCVVAKESVGKQISIAFLERVKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKTETLRSQAQDFRKQGTQVRRKMWYQNMKIKLVVLGILLFLVLVIWLSICGGFDCTN* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2158 229 PRINTS Synaptobrevin signature 143 162 IPR001388 GO:0016021|GO:0016192
Apr1g2158 229 PRINTS Synaptobrevin signature 163 182 IPR001388 GO:0016021|GO:0016192
Apr1g2158 229 PRINTS Synaptobrevin signature 199 218 IPR001388 GO:0016021|GO:0016192
Apr1g2158 229 SMART Longin_2 31 121 IPR010908 -
Apr1g2158 229 CDD R-SNARE 137 196 - -
Apr1g2158 229 Pfam Regulated-SNARE-like domain 32 118 IPR010908 -
Apr1g2158 229 ProSiteProfiles Longin domain profile. 10 122 IPR010908 -
Apr1g2158 229 ProSitePatterns Synaptobrevin signature. 156 175 IPR001388 GO:0016021|GO:0016192
Apr1g2158 229 Gene3D Longin domain 6 124 - -
Apr1g2158 229 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 138 198 IPR042855 -
Apr1g2158 229 PANTHER SNARE PROTEINS 1 228 - -
Apr1g2158 229 CDD Longin 7 128 IPR010908 -
Apr1g2158 229 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 724 1 228 - -
Apr1g2158 229 SUPERFAMILY SNARE-like 6 129 IPR011012 -
Apr1g2158 229 Pfam Synaptobrevin 137 223 IPR042855 -
Apr1g2158 229 SUPERFAMILY SNARE fusion complex 134 200 - -
Apr1g2158 229 Gene3D - 125 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2158 Apr-Chr1 31045120 31047609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2158 1 228 Miscellaneous Gene Families AT1G04760 67.105 1.55e-111 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2158 K08511 - gmx:100527252 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2158 1 31045120 31047609 Apr1g2158 1 31045120 31047609 ECH
Apr9g2232 9 30208875 30211828 Apr1g2158 1 31045120 31047609 PCT