Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2142 ATGATGGACCTCAAATACATGTGGGTGCTTGTTTCAATCAACAGGTTCATTCTTGACACCTTGGAAAATGAAAAAACAAGGAGTGCTCTAAAATTGAGATGCACCTCCAAGTTAAGGATTCAAAAGCAGGAGTTTTTTGAGTTCTCTGAGCAATCAGTGTTGTCTAATCTTTACTGGGGTGTTGATAGCATTGAGGCTGCAATTCAAGCACAACAGCCGGAAGAAAGATCTTTTAGGCTAATGAATTCAGAACAAATGCTTCAGGTTCCAGCAATGCTTGATGAAGAAGAGGTCACAGCCACAATTCCAAACCGTTACTTGGTGTGCTGCTCCTACTTTTATCTCTCAGTGGTGAGGAAACTTCAGGGTGATGAATGGCAAGCAGCACTGCATTTTCTACAAGCAGTGTTGGTCTCTCCAAAACTTGTTTGGACTGAATTTGCATCGGAACTCTGTGAGAGTCTTTTCCCACTATCAAACATACCCAAAAGGCAAGAAAACAATGGCCATAGAAGTTTGGAATTTGATTCTTCCAGGACTTCTGAAGATGAAATCAATGAAGCAGTTAGGGAGATGGCAAGGAGGTACAAGGAATGTTTGGTCTATTACCAGGTCATGCTTTATGGAGAGACTCCATGGTGGCGCAGTTATTGCAGCAAACAACAATCAGAATGTTCTATGGATGTACCAAATACCAGCTATGTATCTTCAGCTTCAGTTCAACATGAACCAAGATTAACAACTTGCAATATGTATGAAAAGGTTCATCCACTTGATCCTCAAGATGTGAGGCATACAATGGAACAAGAATCTAAACAATTCATGGATGTTGCTGAATATGATCACAAGAAAGCCCTCAAACAATTTAATTCATTTAAGTATCGTAGCATAGAGGACCAAACAATTTCAAGCATCAAATGCTTTGAGGATATGTTGAAAGAAGCACACACTAAAACACCAGCATTATTGGATGCATGCTATGAGGATTTTAGAGACAAAAGGGACCTGGAAAATGTGGATGACCGAAATTTTCCAATAAGAACAACAATAACAAAAGCAGATGATTTACCACCATTATATGACCGGAAACTACATCAACACTCTGGTTTGACTCAAGCTCCTCATTATCCAATGCAAGAACAGTCATTGGATAAGAGAAACATAATTAAGATTGATTCTAGCAGATTTGACAGGTCCATAGAAGATGTTACTTTATCTATCTCAAAATACAGAGATAAAACAATAAATACTTATTTAAATTGTCATGTAGAGGATGAATTCATTGACGAAGTAGGGCAGCCACTAAAATTGCATCTCTTTGATCATGTAACCTTTACATCTACTTGCAAACATAAACCAAGCCAGAAAAATCATGAAGAAAGCTCTGAGATGAAATCATTGTATAGCCTAGGAAACTTTGATGAAGTTTGTTCAAATTCCAGAAGATATTCCCTGCAGGACCGTTCAGGAATGACTGAAAGGAGAATTCAAGAACTACAATATTCAGAGGCATTAGGAAAATGTGATGAAGAATATACTGTAGACATTGCATCCATTTATGAGAGTTTGATTAGTTCATCAGGTGCTACTTATGCTTCCTTGAAGGATGTGATTTTGGATGAACTGTTAATAGTTATCTCTACTTCTAAAGAGGAAAGAAAAATAAGGGCCTCAGTATCTATTCTGACTACAATAATTTCAAGGAACAAGTCAATTATAGAAGATGTCAAGAAGAAAGGTTTGAGGTTGTGTGATCTGGCAAGTGCTCTTAAACAAAATGTCCATGAAGCTGCAATTCTAATATATTTAATAAATCCATCACCTATAGATATAAAAACATTGGAACTTCTGCCAATATTAGTGGAGATTGTGTGCACTTCAAATAGTTACAAGAATAAGCCAGAGTCACTTCTTCTGACACCTCATGCCGCATCATTGATGATCATTGAAGAACTAGTAACTTCTTTTGACTATGCCACAAATAACATGCATTTGGCCACAATCAGTTCTCCTCACGTTCTCAGTGGACTTCTAGAAGTTGCCAGAAATGATAATCTAGACGAATTTTTCTCTTTGACCACCATTCTTATAAAATGCATACAGTTTGATGCACAGTGCAGAAAGTATGTGTCACAATTCACTCCACTTGCTCCCTTTATCCACCTTCTGCAGTCAGAAAACACCCGTGCCAAATGCATGGCTCTTGAATTTTTTCATGAAATCCTTTGCATACCACGATCATCAGCTATTAATCTGCTGCAGCGTATACAGCAAGAAAAAAGCATAAATATTATGCAGATACTAATGCATTGTGCCTATCAATTACAACCTGATCACCAGCTTTTAGCAGTAAACATTTTGCTTCAGTTAGACACAATGAACTCATCTGATAAAAGCTTGTTCAGAGAAGAAGCAGTGCAGATCCTTCTCAGGGCAATGGCATCTCAAGAAAGCTCAGAGCAGATATTATCTGCATCAATTCTATCAAATCTTGCTGGTACATATGCTTGGACAGGGGAACCATATACAGCTGCATGGTTGCTGAGAAAAACAGGCTTGACCTCACACTACCACCAGAATATGATAAGAAACTTCAACTGGTTGGATCAGAGTCTACAGGATACCAGCATAGATTTATGGTGCAGTAAAATTGCCAAATATATCATTAGCATTGGGGATTCTGTCTTCCATGCTTTAGAGAGGGGTCTAAGAAGTAAGATGAAAATGGTTTCTAGAGACTGTCTTGTAACCATTTCATGGCTTGGATGTCAAGTATCAAAAAACCCTGACAGCCTCAGTTATTCTGCATCTGAGAGTATACTGAGTGGAGTTGAGCAATTTCTACATCCTGGGGTGGAGTTGGAGGAAAGACTTCTAGCATGTCTGTGCATGTTTAATTATGCTTCTGGGAAAGGAAAGCAAAAACTAATGCATTTCTCAGAAGGAGTAAAGGAATCATTGAGACGCCTTTCAAGTATAATTTGGATGGCTGAGGAATTACACAGAGTAGCCGATTTCTTGCTGCCAAACATATCACGTATTTCTTGTGTTCACACACAAATCCTTGAGGCAGGTCGCAGCTTCAGCGTAGCAGTTTGCTCCCTCATATACTTCAAGGGGTTGCTGTTCAGTGGATATTCAGATGGATCAATAAAGGTTTGGGATATTAGGGGACACTCAGCCAGTCTTGTATGGGACATTAAAGAGCACAAGAAGTCTGTGACATGCTTTTCACTTAATGAACCATCAGATAGCCTTTTAAGCGGATCCGCCGATAAAACTATAAGGGTGTGGAAAATGATCCAGAGAAAGCTGGAATGTGTTGAAGTTATAGTATTGAAGGAACCAATTCATCATTTACGTGCACATGGTGAAACAATTTTTGCAATTTCTGAAAGCCAGGGACTAAAGCTAATTAACGAATCGAGAGTGATCAGAGATATCTTCAAAGGTAAGCATGTGAAGTGCATGGCAATAGCTCAAGGAAAGTTATATATTGGATGCACAGATTCGAGTATACAGGAGTATTCCACAACACACAACCGTGAACTAGAAATCAAACCACCTACAAGGAGTTGGAGGAAGCGAAGTAAGCCCATCAATGCAGTTGTAGCACATAGAGACTGGCTCTATAGTGCAAGTAAGCATGTTGAAGGCACAACATTCAAGGAGTGGAAAAGAGCTAGGAAACCCAAAGTCTCAATCCTCACTGACAAAGGAGATAACGTGGTGGCCTTGGAAGTGGTTGAAGACTTCTTGTACCAAATCTCCAGCTCATCACCGAATAACATTCAGATCTGGTTGAGAGGAGCACCAAAAAAGTTAGGAAGAATATCGGCTGGAAGCAAGATAACAAGCATCCTCGCAGCCAATGACATCATTTTTTGTGGTACTGAAATGGGACTAATCAAGGGTTGGATCCCTCTGTAG 3930 0.3919 MMDLKYMWVLVSINRFILDTLENEKTRSALKLRCTSKLRIQKQEFFEFSEQSVLSNLYWGVDSIEAAIQAQQPEERSFRLMNSEQMLQVPAMLDEEEVTATIPNRYLVCCSYFYLSVVRKLQGDEWQAALHFLQAVLVSPKLVWTEFASELCESLFPLSNIPKRQENNGHRSLEFDSSRTSEDEINEAVREMARRYKECLVYYQVMLYGETPWWRSYCSKQQSECSMDVPNTSYVSSASVQHEPRLTTCNMYEKVHPLDPQDVRHTMEQESKQFMDVAEYDHKKALKQFNSFKYRSIEDQTISSIKCFEDMLKEAHTKTPALLDACYEDFRDKRDLENVDDRNFPIRTTITKADDLPPLYDRKLHQHSGLTQAPHYPMQEQSLDKRNIIKIDSSRFDRSIEDVTLSISKYRDKTINTYLNCHVEDEFIDEVGQPLKLHLFDHVTFTSTCKHKPSQKNHEESSEMKSLYSLGNFDEVCSNSRRYSLQDRSGMTERRIQELQYSEALGKCDEEYTVDIASIYESLISSSGATYASLKDVILDELLIVISTSKEERKIRASVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPSPIDIKTLELLPILVEIVCTSNSYKNKPESLLLTPHAASLMIIEELVTSFDYATNNMHLATISSPHVLSGLLEVARNDNLDEFFSLTTILIKCIQFDAQCRKYVSQFTPLAPFIHLLQSENTRAKCMALEFFHEILCIPRSSAINLLQRIQQEKSINIMQILMHCAYQLQPDHQLLAVNILLQLDTMNSSDKSLFREEAVQILLRAMASQESSEQILSASILSNLAGTYAWTGEPYTAAWLLRKTGLTSHYHQNMIRNFNWLDQSLQDTSIDLWCSKIAKYIISIGDSVFHALERGLRSKMKMVSRDCLVTISWLGCQVSKNPDSLSYSASESILSGVEQFLHPGVELEERLLACLCMFNYASGKGKQKLMHFSEGVKESLRRLSSIIWMAEELHRVADFLLPNISRISCVHTQILEAGRSFSVAVCSLIYFKGLLFSGYSDGSIKVWDIRGHSASLVWDIKEHKKSVTCFSLNEPSDSLLSGSADKTIRVWKMIQRKLECVEVIVLKEPIHHLRAHGETIFAISESQGLKLINESRVIRDIFKGKHVKCMAIAQGKLYIGCTDSSIQEYSTTHNRELEIKPPTRSWRKRSKPINAVVAHRDWLYSASKHVEGTTFKEWKRARKPKVSILTDKGDNVVALEVVEDFLYQISSSSPNNIQIWLRGAPKKLGRISAGSKITSILAANDIIFCGTEMGLIKGWIPL* 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2142 1309 SMART WD40_4 1015 1055 IPR001680 GO:0005515
Apr1g2142 1309 SMART WD40_4 1060 1099 IPR001680 GO:0005515
Apr1g2142 1309 SMART WD40_4 1141 1177 IPR001680 GO:0005515
Apr1g2142 1309 Pfam WD domain, G-beta repeat 1065 1099 IPR001680 GO:0005515
Apr1g2142 1309 SUPERFAMILY ARM repeat 664 994 IPR016024 -
Apr1g2142 1309 Gene3D - 1000 1308 IPR015943 GO:0005515
Apr1g2142 1309 ProSiteProfiles Trp-Asp (WD) repeats profile. 1041 1064 IPR001680 GO:0005515
Apr1g2142 1309 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 9 1309 - -
Apr1g2142 1309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1067 1100 - -
Apr1g2142 1309 ProSitePatterns Trp-Asp (WD) repeats signature. 1042 1056 IPR019775 -
Apr1g2142 1309 ProSiteProfiles Trp-Asp (WD) repeats profile. 1067 1100 IPR001680 GO:0005515
Apr1g2142 1309 PANTHER OS04G0584500 PROTEIN 9 1309 - -
Apr1g2142 1309 SUPERFAMILY WD40 repeat-like 1034 1305 IPR036322 GO:0005515
Apr1g2142 1309 Gene3D - 539 993 IPR011989 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2142 - - gmx:100782870 2247.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2142 1 30910056 30918372 Apr1g2142 1 30910056 30918372 ECH