Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2141 ATGGATCTTCAACCCGCAGAGCCACAGTCCCTGAAGAAACTAAGCTTCAAATCCATCAAGCGTGCCCTCGATCTCTTCTCTCCCGTTCACCGACAACTCGCTCCTCCCGATGCTGAGAGCAAGAGAATACGCATTAGCCACAAGGTTAACGTGGAGTATGGTGGAATCAAAAGCACCACTAATCAACCTCCTCGTCAAGTTGTTTCTGCTACACAGGATCACACTCAACAAGCAGGGCCCTCTAGCACACTTGCGCTTCCTGGTCCTGGAGATTCCAAGGATCCCCAAAGAGGACCCCAAAATGCTTTGGTTGTTGGTCCATCTATGCCATCCACAGCTCCGAATGATATTGGCTTTCAGAGCAAAAGTACAGCAGTTATTTCTGCCTCTGGTTCATCTGAAAGAAACTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAGATGGCCTCGTCCTGTATGGCATGCACCATGGAAGAACTACAGGGTCATCAGTGGTCACTTGGGATGGGTGAGATCTGTCGCAGTTGATCCCAGTAACACATGGTTTTGTACTGGTTCTGCAGATCGAACTATCAAGATATGGGACTTGGCAAGTGGAGTACTAAAGCTCACATTAACGGGCCACATTGAGCAAATAAGAGGCCTTGCTATTAGCAACAAACATACTTATATGTTCTCTGCTGGTGATGATAAACAAGTTAAATGTTGGGACCTTGAACAGAATAAGGTTATTAGGTCTTATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGACATTTTACTAACTGGAGGACGTGATTCTGTCTGCCGGGTCTGGGATATACGTAGTAAAATGCAAATTCATGCTCTTTCTGGTCATGAGAATACAGTCTGTTCCGTGTTTACGCGGCCAACGGATCCCCAAGTTGTTACTGGTTCTCATGACACTACCATCAAGATGTGGGACCTTAGACATGGTAAAACAATGTTAACCCTTACAAACCATAAAAAATCTGTTCGAGCAATGGCTCCACATCCCAAAGAGCAATCTTTTGCATCTGCATCAGCTGACAACATTAAAAAATTCAACCTTCCAAAAGGAGAATTTTTGCACAATATGCTCTCCCAACAGAAAACTATCATCAACGCAATGGCTGTCAACGAGGAGGGTGTGATGGTTACTGGAGGTGACAATGGCAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAAGCGCAAACAATTGTACAGCCTGGTTCACTGGACAGTGAAGCTGGTATTTATGCTTTAACCTATGATGTTACTGGTTCAAGGCTTATAACCTGTGAAGCTGACAAGACGATAAAAATGTGGAAAGAAGATGAAACTGCCACTCCTGAAACAAATCCCCTTAACTTCAGGCCTCCTAAAGATATCCGTCGATTCTAA 1440 0.4444 MDLQPAEPQSLKKLSFKSIKRALDLFSPVHRQLAPPDAESKRIRISHKVNVEYGGIKSTTNQPPRQVVSATQDHTQQAGPSSTLALPGPGDSKDPQRGPQNALVVGPSMPSTAPNDIGFQSKSTAVISASGSSERNLSTSALMERMPSRWPRPVWHAPWKNYRVISGHLGWVRSVAVDPSNTWFCTGSADRTIKIWDLASGVLKLTLTGHIEQIRGLAISNKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHENTVCSVFTRPTDPQVVTGSHDTTIKMWDLRHGKTMLTLTNHKKSVRAMAPHPKEQSFASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALTYDVTGSRLITCEADKTIKMWKEDETATPETNPLNFRPPKDIRRF* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2141 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 244 - -
Apr1g2141 479 Pfam WD domain, G-beta repeat 288 323 IPR001680 GO:0005515
Apr1g2141 479 Pfam WD domain, G-beta repeat 160 197 IPR001680 GO:0005515
Apr1g2141 479 Pfam WD domain, G-beta repeat 244 281 IPR001680 GO:0005515
Apr1g2141 479 Pfam WD domain, G-beta repeat 205 239 IPR001680 GO:0005515
Apr1g2141 479 MobiDBLite consensus disorder prediction 458 479 - -
Apr1g2141 479 MobiDBLite consensus disorder prediction 53 102 - -
Apr1g2141 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 165 201 - -
Apr1g2141 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 332 IPR001680 GO:0005515
Apr1g2141 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 325 - -
Apr1g2141 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 248 IPR001680 GO:0005515
Apr1g2141 479 PANTHER BNAA01G27690D PROTEIN 6 479 - -
Apr1g2141 479 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 6 479 IPR045241 GO:0000398
Apr1g2141 479 SMART WD40_4 284 323 IPR001680 GO:0005515
Apr1g2141 479 SMART WD40_4 200 239 IPR001680 GO:0005515
Apr1g2141 479 SMART WD40_4 158 197 IPR001680 GO:0005515
Apr1g2141 479 SMART WD40_4 418 456 IPR001680 GO:0005515
Apr1g2141 479 SMART WD40_4 326 364 IPR001680 GO:0005515
Apr1g2141 479 SMART WD40_4 242 281 IPR001680 GO:0005515
Apr1g2141 479 SMART WD40_4 367 406 IPR001680 GO:0005515
Apr1g2141 479 PRINTS G protein beta WD-40 repeat signature 184 198 IPR020472 -
Apr1g2141 479 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Apr1g2141 479 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Apr1g2141 479 CDD WD40 161 456 - -
Apr1g2141 479 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 284 - -
Apr1g2141 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 206 IPR001680 GO:0005515
Apr1g2141 479 ProSitePatterns Trp-Asp (WD) repeats signature. 268 282 IPR019775 -
Apr1g2141 479 MobiDBLite consensus disorder prediction 53 83 - -
Apr1g2141 479 Gene3D - 144 479 IPR015943 GO:0005515
Apr1g2141 479 SUPERFAMILY WD40 repeat-like 154 456 IPR036322 GO:0005515
Apr1g2141 479 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
Apr1g2141 479 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 290 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2141 207 455 Miscellaneous Gene Families AT5G08390 23.506 4.84e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2141 K12862 - gmx:100775526 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2141 1 30901147 30907761 Apr1g2141 1 30901147 30907761 ECH