Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2140 ATGGAACCTTACAGTTTGTGTTCTTCATTAGAAATGTTGACACAACACATCAACACCCTCATTGAGCTTATAATCTCACCTTACCATTGTTTGGCTATGTTTTTGGTTGCATGTCTATCAGTCCTTTACTTTGCATGCAGAAGAAAAGCACCCATTTATTTGATAGGCTTTACCTGCTACAGTCCACCCAGTTCTTATAGGCTACCAATGGCCATGTTTGAAGAGAATCAATTTTTTGATAACATGGATCCAGAAGCTGTTGCTTTCCAATGCAAGATCATGGCAAAATCTGGATTCAGTGATGAAACATCCATTTCTCCATCTCTTGCTCAGATGCCCAAAATAAAAGCTCTCTCCTTTGCACTTGAGGAGGCTGAAACAATAATGTGTTCAGTAATCACGGACCTGTTTCAGAAAAACAACATAAACCCAAAAGCCATTGACATACTCATAACTAATAGCAGTGTGTTCTGTCCCACCCCGTGTCTTAGTGCCATGGTGGTTAACAAATTCAGAATGAGGAGCAACATCATGAGCTTCAACCTATCAGGTATGGGATGCAGTGCTGGAATTATATCAATGAGTCTAGCTAAAGACTTGTTGAGGGTTCACAGGAACTCACTGGCTTTAATAGTAAGCACAGAGACACTGAGTCTAAATTGGTACACTGGAAAAGTACCATCTATGCTGCTATCTAATTGCCTATTCAGAATGGGTGGAGCAGCTATATTGATGTCTAGCAGGGCCCAAGATAAGCACAAGGCAAAGTATGAACTACAGCATATTGTTAGAACAATCACTGCACAGGATGATCAATCTCATGGTTGTGTCTACCAGGAGGTGGATCCAGAGAACAAAGAAGGTATATCAATATCAAAGAACATAGTTAATGTGTCTGGAGATGCACTGAAGAAAAATATAGCTTCACTGGGACCATTGGTTTTGCCATTAAGGGAGCAATTCCTGTATGTATTTTCCATTATTTGCCACAAACTGTGGAGTACAAGAAGAACAAGCATCTATACTCCAAATTTCAATAATGCTTTTGAGCATTTCTGCATACATTCAGGGGGAAGAGCCATTATACAAGCTGTTGAAAGAAATTTGAGGCTAAGGAAACAGGATGTGGAGCCATCAACCATGACTCTTTACAGATTTGGAAATACTTCATCTTCTTCAATTTGGTACGAGCTGAGCTACATAGAAGCAAAAGGGAGGATGAAATGTGGTGATAGGGTATGGCAAATTGCCTTTGGAAGTGGATTCAAGTGTAATAGTGCAGTGTGGAAATGTATATGCCACGTGAAGACAGACACTGCCACTGCATGGAGGGATACAATTCACTCATACCCTGTGGATATTGTCAGAACAAACTGA 1377 0.4031 MEPYSLCSSLEMLTQHINTLIELIISPYHCLAMFLVACLSVLYFACRRKAPIYLIGFTCYSPPSSYRLPMAMFEENQFFDNMDPEAVAFQCKIMAKSGFSDETSISPSLAQMPKIKALSFALEEAETIMCSVITDLFQKNNINPKAIDILITNSSVFCPTPCLSAMVVNKFRMRSNIMSFNLSGMGCSAGIISMSLAKDLLRVHRNSLALIVSTETLSLNWYTGKVPSMLLSNCLFRMGGAAILMSSRAQDKHKAKYELQHIVRTITAQDDQSHGCVYQEVDPENKEGISISKNIVNVSGDALKKNIASLGPLVLPLREQFLYVFSIICHKLWSTRRTSIYTPNFNNAFEHFCIHSGGRAIIQAVERNLRLRKQDVEPSTMTLYRFGNTSSSSIWYELSYIEAKGRMKCGDRVWQIAFGSGFKCNSAVWKCICHVKTDTATAWRDTIHSYPVDIVRTN* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2140 458 PIRSF Very_long_ch_3-ktacl-CoA_syn 4 458 IPR012392 GO:0006633|GO:0016020|GO:0016747
Apr1g2140 458 Pfam FAE1/Type III polyketide synthase-like protein 46 331 IPR013601 GO:0006633|GO:0016020|GO:0016747
Apr1g2140 458 Gene3D - 72 431 IPR016039 GO:0016746
Apr1g2140 458 CDD CHS_like 53 429 - -
Apr1g2140 458 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 349 430 IPR013747 -
Apr1g2140 458 SUPERFAMILY Thiolase-like 260 431 IPR016039 GO:0016746
Apr1g2140 458 SUPERFAMILY Thiolase-like 39 250 IPR016039 GO:0016746
Apr1g2140 458 PANTHER 3-KETOACYL-COA SYNTHASE 20 455 IPR012392 GO:0006633|GO:0016020|GO:0016747
Apr1g2140 458 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 20 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2140 Apr-Chr1 30896771 30898175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2140 23 452 Acyl Lipid Metabolism Gene Families AT1G71160 52.752 5.02e-168 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2140 K15397 - gmx:100783404 843.188