Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2139 ATGATGAAGTTGCAGAGGTCAAGACATGGAGCCAAAATGTTTGGTTCTTTTAGTGATTCACTGAGCAACGTTAACGTTAATCCTTCATTGTGTTCCAACACACCACACTATCAATTCACAGTTACAGATCCCACTGTACTCCACCAAGTTCTCGAACGCTGTAGAGTTTCAATGGATTTCAAAACTGCCACTAAAACCCATGCAAGGGTCGTTGTACTTGGCTATGCCACTTACCCTTCTCTTGTGGCTTCTCTGATATTAACCTATGTTCACTTTCACCAACACCACATTGCCCATCATGTTTTCTCTAACGTTTTGGATCTGTTTTACATGAATCTGGTGATCGAAAGCTTAATGAAAGGTGGGCATTGTGATGTTGCCAAGAGGGTGTTTGGCAAAATGCCTGTTAGAGATGTGGTCACTTGGAACTCCATGATTGGAGGGTATGTTAAAAACATGCGCTTTTCTGATGCTTTGAGTTTTTTCCGGAGGATGCTGAAGAGTGTCAAGGTTGAACCTGATGGGTTCACCTTTGCTTCTGTGGTTGCTGCGTGTTCTCGCCTTGGGGCTCTTTGCTATGCCAAGTGGGTGCATGGTTTGATGAATGAGAAAAGGGTTGAGCTGAATTATATATTGAGTGCTGCATTGATTGACATGTATGCTAAGTGTGGTAGAATTGATGTTTCAAAAAGGGTTTTTGAGGATGTTACGCGTGATCATGTGTCTGTTTGGAATGCTATGATTAATGGGTTGGCAATTCATGGGCTTGCTTTGGATGCGATGGCAGTGTTTTCGAGGATGGAGATGGAATGTATTTTGCCAGATTCTGTTACTTTTATTGGGATTCTGACTGCTTGTAGCCACTGTGGATTGGTTGAAGAAGGTCGCTCATATTTTGATATGATGCAGAATTGTTTCTTGATTCGGCCACATCTTGAGCATTATGGAAGCATGGTTGATCTCTTGGGACGAGCAGGGCTCTTAGAAGAGGCCTATGCTATGATTAAGGTGATGCCAATGGAGCCTGATGTTGTTATTTGGAGAGCAGTTTTGAGTGCTTGTAGAATCCATAGAAAGAAAGAACTTGGTGAAGTTGCCATTGCAAACATTTCCCACCTAGAGAGTGGGGATTTTGTGTTGCTGTCAAATATGTATTGTTCTTTAAATAACTGGGATACTGCTGAGCGAGTGAGACGGATGATGAAAATGGGAGGGGTTCGTAAAAGGCGTGGTAAGAGTTGGATTGAATTAGGGGACAGTATTCACCAGTTCAATGCAGCTGATCAGTCACATGCTGAAATGAAAGCAATTTACAGAGTGCTGGAAGGTTTGATCCAAAGAGCTAAGTTGGAGGGATTCATACCCTTGACAGATTTGGTTCTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTGATGTTTCATAGTGAAAAGTTGGCCTTGGCCTATGGGGTCCTGAAAAGTAGCCCAGGAACAAAAATCAGGATTTCCAAAAACCTGCGTATCTGTCAAGATTGTCATGATTGGATTAAAATTGTGTCAAGAATATTAAACAGGGAAATAATTGTGAGGGATCGCATCCGTTTTCACCAATTTGAAGGTGGTTTTTGCTCTTGCAGAGACTACTGGTAG 1635 0.4208 MMKLQRSRHGAKMFGSFSDSLSNVNVNPSLCSNTPHYQFTVTDPTVLHQVLERCRVSMDFKTATKTHARVVVLGYATYPSLVASLILTYVHFHQHHIAHHVFSNVLDLFYMNLVIESLMKGGHCDVAKRVFGKMPVRDVVTWNSMIGGYVKNMRFSDALSFFRRMLKSVKVEPDGFTFASVVAACSRLGALCYAKWVHGLMNEKRVELNYILSAALIDMYAKCGRIDVSKRVFEDVTRDHVSVWNAMINGLAIHGLALDAMAVFSRMEMECILPDSVTFIGILTACSHCGLVEEGRSYFDMMQNCFLIRPHLEHYGSMVDLLGRAGLLEEAYAMIKVMPMEPDVVIWRAVLSACRIHRKKELGEVAIANISHLESGDFVLLSNMYCSLNNWDTAERVRRMMKMGGVRKRRGKSWIELGDSIHQFNAADQSHAEMKAIYRVLEGLIQRAKLEGFIPLTDLVLMDVSEEEKEENLMFHSEKLALAYGVLKSSPGTKIRISKNLRICQDCHDWIKIVSRILNREIIVRDRIRFHQFEGGFCSCRDYW* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2139 544 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 490 - -
Apr1g2139 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 168 IPR002885 -
Apr1g2139 544 TIGRFAM PPR: pentatricopeptide repeat domain 140 174 IPR002885 -
Apr1g2139 544 TIGRFAM PPR: pentatricopeptide repeat domain 243 275 IPR002885 -
Apr1g2139 544 Pfam PPR repeat family 137 186 IPR002885 -
Apr1g2139 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Apr1g2139 544 Pfam PPR repeat 215 238 IPR002885 -
Apr1g2139 544 Pfam PPR repeat 277 304 IPR002885 -
Apr1g2139 544 Pfam PPR repeat 243 270 IPR002885 -
Apr1g2139 544 Pfam PPR repeat 314 339 IPR002885 -
Apr1g2139 544 Pfam E motif 357 416 IPR046848 -
Apr1g2139 544 Gene3D Tetratricopeptide repeat domain 215 439 IPR011990 GO:0005515
Apr1g2139 544 Pfam DYW family of nucleic acid deaminases 452 544 IPR032867 GO:0008270
Apr1g2139 544 Gene3D Tetratricopeptide repeat domain 74 192 IPR011990 GO:0005515
Apr1g2139 544 PANTHER OS07G0578800 PROTEIN-RELATED 35 490 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2139 Apr-Chr1 30891521 30893924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2139 112 544 Glycoside Hydrolase AT3G49170 38.864 2.34e-104 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2139 - - gmx:100788229 868.226