Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2112 ATGGGTGTTTACACTGACACAGATGAGTATCCATCTACAATCTCTCCAGCAAGGTTGTTCAAAGCCTTGGTTGTTGATGCTCACAACCTCATTCCAAAACTTCTGCCACATGCTGTGAAGAGCATTGAACTAATACAGGGTGATGGTGGTGCTGGAAGCATCATGCAGATTAATTTTATTGAAGGTAGCCATATGAAAAGTGTTAAGAACCGGGTTGATGAGATAAACAAGGACACATTTACTTACAATTACACATTGATTGAAGGTGAAGCATTGAAGGACAAGTTTGCATCCATTGCTCACGAGACTAAGTTTGAGGCAACACCTGATGGTGGTAGCATGAATAAGATAACAAACAAGTATTATCTTAAAGGTGATATAGAGATCAACGAAGAGGACATTAAGGCTGGCAAGGAAAAAGTCTTAGGCATTTACAAAGTTGTGGAAACTTATCTCCTGCAGAACCCTGATGTGTATGCTTGA 483 0.3996 MGVYTDTDEYPSTISPARLFKALVVDAHNLIPKLLPHAVKSIELIQGDGGAGSIMQINFIEGSHMKSVKNRVDEINKDTFTYNYTLIEGEALKDKFASIAHETKFEATPDGGSMNKITNKYYLKGDIEINEEDIKAGKEKVLGIYKVVETYLLQNPDVYA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2112 160 PANTHER MAJOR ALLERGEN PRU AR 1-LIKE 1 160 - -
Apr1g2112 160 Pfam Pathogenesis-related protein Bet v 1 family 3 154 IPR000916 GO:0006952
Apr1g2112 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2112 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2112 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2112 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2112 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2112 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2112 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2112 160 PANTHER - 1 160 - -
Apr1g2112 160 Gene3D - 2 159 IPR023393 -
Apr1g2112 160 SUPERFAMILY Bet v1-like 3 159 - -
Apr1g2112 160 CDD Bet_v1-like 7 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2112 Apr-Chr1 30610951 30611761 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2112 - - gmx:100815099 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2112 1 30610951 30611761 Apr1g2112 1 30610951 30611761 ECH
Apr1g2112 1 30610951 30611761 Apr9g2275 9 30497501 30498294 PCT