Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2108 ATGGGTGTTGTCACTACTGAAATTGAGATAACTTGTGCCGTGGCTCCTGCAATACTATACAAAGCGATGGTCCTTGATGCTACCAAAATTTTTCCAAAAGCTTTACCAAACTTCATTAAGAGTGTTGACATCATTGAAGGAGACGGAGGTCCGGGATCCATTAAGCAGTTTACTCTTCCCGAAGGATACGTAAAGCTCGAGGTAAATGTGGTGGATTCAATAAACTACGTGTACCAGTGCACAATAATTGAAGCTGTAACGAGTATTTTGTCAGACCCATTGGAGAAGATATCGAATGAGTACAAATTTGTGGGAAGCCTTGATGGAGGGTGCATCGTCAAGTCCACAGGCAAATACTATACCAAAGGTGATGAGCAACTGACAGAAGAATTTCTGAAGCCTAACAAGGAAAGGTTTACACTGTTCACCAAGGGTATTGAGGATTATCTTATGGCAAATCCTGATTACAACTGA 474 0.4135 MGVVTTEIEITCAVAPAILYKAMVLDATKIFPKALPNFIKSVDIIEGDGGPGSIKQFTLPEGYVKLEVNVVDSINYVYQCTIIEAVTSILSDPLEKISNEYKFVGSLDGGCIVKSTGKYYTKGDEQLTEEFLKPNKERFTLFTKGIEDYLMANPDYN* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2108 157 Pfam Pathogenesis-related protein Bet v 1 family 1 152 IPR000916 GO:0006952
Apr1g2108 157 Gene3D - 1 157 IPR023393 -
Apr1g2108 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2108 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2108 157 PRINTS Major pollen allergen Bet V1 signature 62 81 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2108 157 PRINTS Major pollen allergen Bet V1 signature 108 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2108 157 PRINTS Major pollen allergen Bet V1 signature 142 152 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2108 157 PANTHER - 1 157 - -
Apr1g2108 157 PANTHER NODULIN-13 1 157 - -
Apr1g2108 157 CDD Bet_v1-like 5 150 - -
Apr1g2108 157 SUPERFAMILY Bet v1-like 2 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2108 Apr-Chr1 30596805 30602567 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2108 - - aprc:113852251 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2108 1 30596805 30602567 Apr1g2108 1 30596805 30602567 ECH
Apr1g2108 1 30596805 30602567 Apr9g2276 9 30500651 30501380 PCT