Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2107 ATGGGTGTTTTCACTTACAATGACGAGGAAATCTCATCCGTGGCTCCAGAGAAACTCTATAAAGCTTTGACAAAAGATGCTGACAGTATCACTCCAAGGGTGCTTGAAGCCATCCAGAGTGTTGAAATCGTTGAAGGAAATGGAGGGCCCGGAACCATCAAGAAGATAACCGTTCTTGAAGGCGGGAAAACTAGCTACGTGCTGGAAAAGGTTGACGCAGTTGATGAGGCTAACTTGGGATACGACTACAGCTTTGTGGGAGGAACAGCGTTGGATGAAAGTTTGGAGAAAGTAACATTCGTGACAAAGGTGGTGGCTGGCCCAAATGGTGGCTCCATTGGGAAGGTCACTGTCAATTACCACACCAAAGGCGATGCACCACTTTCAGAAGCAGTGCGTGAGGAAACTATGGCCAAGGGAACTGGGCTTTTCAAGGCCATTGAGGGTTATATTCTTGCAAATCCTGATTACTAG 474 0.4705 MGVFTYNDEEISSVAPEKLYKALTKDADSITPRVLEAIQSVEIVEGNGGPGTIKKITVLEGGKTSYVLEKVDAVDEANLGYDYSFVGGTALDESLEKVTFVTKVVAGPNGGSIGKVTVNYHTKGDAPLSEAVREETMAKGTGLFKAIEGYILANPDY* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2107 157 PANTHER - 1 157 - -
Apr1g2107 157 CDD Bet_v1-like 4 150 - -
Apr1g2107 157 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Apr1g2107 157 Gene3D - 2 157 IPR023393 -
Apr1g2107 157 SUPERFAMILY Bet v1-like 2 157 - -
Apr1g2107 157 PANTHER ABA-RESPONSIVE PROTEIN 1 157 - -
Apr1g2107 157 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2107 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2107 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2107 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2107 157 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2107 157 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2107 157 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Apr1g2107 157 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2107 Apr-Chr1 30593170 30594806 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2107 - - gmx:100305867 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2107 1 30593170 30594806 Apr1g2107 1 30593170 30594806 ECH
Apr9g2275 9 30497501 30498294 Apr1g2107 1 30593170 30594806 PCT