Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2090 ATGGGTTATTGCAATGGCAAAAGCCTATTGGCTTTTGGGTTAGTGATTTGTGTGACACTGACCTTAATAAGGGTAGGGGAAGGGAGGGTGCCCTTTGCATGTGACCCTAAAAATGGGTTAACAAGAGGGTTCAAGTTTTGTAGAACAAACGTGCCTATACACGTGAGGGTGCAAGACCTCATAGGAAGGCTCACATTGCCTGAGAAAATAAGGCTTGTGGTGAACAATGCCATTGCGGTGCCAAGGCTTGGAATCCAAGGCTATGAGTGGTGGTCAGAAGCACTACACGGCGTTTCCAATGTGGGGCCCGGTACCAAGTTCGGTGGGGCCTTCCCTGGCGCCACTAGCTTCCCTCAAGTCATCACAACCGCTGCTTCCTTCAATCAATCACTGTGGAAAGAAATTGGACAGGTGGTATCCGATGAAGGAAGAGCAATGTACAATGGGGGACAGGCAGGTTTGACGTATTGGAGTCCTAACGTGAACATATTCCGTGACCCACGGTGGGGCCGTGGTCAAGAGACTCCCGGAGAAGACCCAGTTTTGGCCGCAAAATACGCCGCCAGCTATGTCCAAGGACTCCAAGGCGACGGTGGCGGTAACCGCCTCAAGGTTGCTGCTTGTTGCAAACACTACACTGCCTATGACCTTGATAACTGGAATGGCATGGACAGGTTCCATTTCAACGCCAGGAAGCATGATTATGATGATGAAAAATGGCTTGGGGTATTGATGGGCGTGCAGGTAAGCAAGCAGGATTTAGCGGACACTTATGACGTACCATTTAAAGCCTGTGTGTTAGAAGGGAAGGTGGCGAGTGTGATGTGTTCCTACAATCAGGTGAATGGCAGGCCCACGTGTGCTGATCCTGAACTCCTTCGCAACACTATTCGTGGCCAATGGGGCCTCAATGGGTACATAGTCTCGGATTGTGACTCAGTTGGGGTTTTCTATGACAACCAACACTACACGAGAACACCCGAAGAGGCAGCCGCAGAGGCTATAAAAGCAGGCCTGGACCTCGATTGTGGTCCATTCTTGGCCCTCCACACCGATTCTGCTATTAGGAGAGGGCTCATTTCCGAAAACGATCTTAACCTTGCCTTAGCCAACCTTATTACGGTCCAAATGAGATTGGGCATGTTTGATGGGGAACCATCGGCCCAACCATATGGAAACCTGGGCCCAAGAGACGTGTGCACACCGGCCCATCAACAACTGGCCCTCGAGGCAGCTAGACAGGGTATTGTCCTTCTACAAAACAAAGGAAACACCCTGCCACTATCCCCTGTGCAACACCGCACCGTAGGAGTCATTGGACCCAATTCGGATGTTACTGTTACAATGATAGGGAACTATGCCGGTGTGGCATGTGGTTATACGACGCCGTTGCAAGGGATTGCGAGGTACGTCAAGACCGTTCATCAGGTCGGATGTAGGGAAGTGGCTTGCGGTGGAAACCAACTATTTGGAGCAGCCGAAACTGTAGCCAGAAGAGTTGACGCCACTGTGCTGGTAATGGGCCTTGACCAGTCCATAGAAGCTGAAACAAGAGACAGACTTGGGCTGCTCTTACCAGGCCACCAACAAGAGCTTGTGTCTAGGGTCGCCAGGGCCTCAAGAGGCCCAGTTATCTTGGTTATAATGTCTGGTGGCCCAGTTGATGTTACATTTGCCAAAAATGACCCCAAGATAAGTGCTATTTTGTGGGCCGGTTATCCTGGCCAAGCTGGGGGAACTGCTATAGCTGATGTGATCTTCGGCACAAGTAACCCTGGAGGAAGATTACCTATGACATGGTACCCACAGGGGTATTTGGCAAAAGTGCCAATGACAAACATGGATATGCGTCCAAACCCAGCAACTGGGTACCCAGGAAGAACCTACAGATTCTACAAAGGTCCAGTAGTGTTCCCTTTTGGGCATGGCCTGAGTTACTCCAGATTCTCTCAAAGCTTAGCACTTGGACCAAAACAGGTCTCAGTGCCTTTAGTAAGCCTCCAAGCACTCTCAAACTCAACCTTTTCAAGCAAAGCAGTGAGGGTGAGCCATGCCAATTGTGATGCATTGGAGATGGCATTTCACATTGATGTCAAAAATGAAGGGTCAATGGATGGGACCCACACCCTTCTCATTTTCTCAAAGCCGCCACCTGGAAAATGGTCTGCAGTTAAACAGTTGGTCGGCTTCCACAAGACCCATGTTCCTGCTGGCTCAAAACAACGAGTCAAAGTTGGTGTTCATGTCTGCAATCACCTTTCCATTGTGGACGAGTTTGGGATTCGAAGAATCCCAATGGGTGAGCATGAACTCCACATTGGTGATGTCAAACATTCCATTTCTGTCCAAACTCTGGATGAAATCAAACACTAG 2373 0.4977 MGYCNGKSLLAFGLVICVTLTLIRVGEGRVPFACDPKNGLTRGFKFCRTNVPIHVRVQDLIGRLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATSFPQVITTAASFNQSLWKEIGQVVSDEGRAMYNGGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAAKYAASYVQGLQGDGGGNRLKVAACCKHYTAYDLDNWNGMDRFHFNARKHDYDDEKWLGVLMGVQVSKQDLADTYDVPFKACVLEGKVASVMCSYNQVNGRPTCADPELLRNTIRGQWGLNGYIVSDCDSVGVFYDNQHYTRTPEEAAAEAIKAGLDLDCGPFLALHTDSAIRRGLISENDLNLALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCTPAHQQLALEAARQGIVLLQNKGNTLPLSPVQHRTVGVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYVKTVHQVGCREVACGGNQLFGAAETVARRVDATVLVMGLDQSIEAETRDRLGLLLPGHQQELVSRVARASRGPVILVIMSGGPVDVTFAKNDPKISAILWAGYPGQAGGTAIADVIFGTSNPGGRLPMTWYPQGYLAKVPMTNMDMRPNPATGYPGRTYRFYKGPVVFPFGHGLSYSRFSQSLALGPKQVSVPLVSLQALSNSTFSSKAVRVSHANCDALEMAFHIDVKNEGSMDGTHTLLIFSKPPPGKWSAVKQLVGFHKTHVPAGSKQRVKVGVHVCNHLSIVDEFGIRRIPMGEHELHIGDVKHSISVQTLDEIKH* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2090 790 Pfam Fibronectin type III-like domain 713 775 IPR026891 -
Apr1g2090 790 Pfam Glycosyl hydrolase family 3 C-terminal domain 416 646 IPR002772 GO:0004553|GO:0005975
Apr1g2090 790 Gene3D - 56 390 IPR036962 GO:0004553|GO:0005975
Apr1g2090 790 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 416 649 IPR036881 GO:0004553|GO:0005975
Apr1g2090 790 PANTHER BETA-D-XYLOSIDASE 1 12 784 - -
Apr1g2090 790 SUPERFAMILY (Trans)glycosidases 45 415 IPR017853 -
Apr1g2090 790 Gene3D - 402 647 IPR036881 GO:0004553|GO:0005975
Apr1g2090 790 PANTHER SUGAR HYDROLASE-RELATED 12 784 IPR044993 GO:0009044|GO:0045493
Apr1g2090 790 Pfam Glycosyl hydrolase family 3 N terminal domain 111 343 IPR001764 GO:0004553|GO:0005975
Apr1g2090 790 Gene3D Immunoglobulins 669 790 IPR013783 -
Apr1g2090 790 SMART Fn3_like_2 708 777 IPR026891 -
Apr1g2090 790 PRINTS Glycosyl hydrolase family 3 signature 117 136 IPR001764 GO:0004553|GO:0005975
Apr1g2090 790 PRINTS Glycosyl hydrolase family 3 signature 205 221 IPR001764 GO:0004553|GO:0005975
Apr1g2090 790 PRINTS Glycosyl hydrolase family 3 signature 296 314 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2090 Apr-Chr1 30443691 30449686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2090 4 783 Glycoside Hydrolase AT5G49360 70.707 0.0 1133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2090 - - gmx:100812823 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2090 1 30443691 30449686 Apr1g2090 1 30443691 30449686 ECH