Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2089 ATGAATCCAACATGGGTTTTTGTGTTGAGTATTGTATCAATGTTAGTCGTTGGGAATGGACAGTCATCAGTGAAGACATTGGTGAAGACAGTGAAGGGAAAGAAGCTATGTGACAAAGGGTGGGAATGTAAAGGGTGGTCTGTTTATTGCTGCAATGATACTATTTCTGACTATTTTCAGACCTACCAATTTGAGAACCTCTTCTCAAAGCGCAATTCACCAGTGGCACATGCTGTTGGATTCTGGGACTACCGTTCTTTTATTACAGCTGCAGCGCTGTATCAGCCTCTTGGGTTTGGCAACACTGGAGGCAAGACCAGTGGAATGAAAGAGCTTGCAGCTTTCCTTGGTCATGTGGGTAGCAAGACCTCTTGTGGTTATGGGGTGGCTACAGGGGGACCCTTGGCCTGGGGCTTATGCTACAACAAGGAGTTGAGTCCTGATAAATACTACTGTGATGAAAACTATAAATTAACCTACCCATGCACTCCTGGTGTGGCATACTACGGCCGTGGAGCCCTGCCAATTTTCTGGAACTACAACTATGGAAAAATTGGGGAAGCCTTGAAGGTGAATCTATTAGACCATCCTGAATACATAGAACAGAATGCTACCCTGGCCTTTCAGGCAGCAATATGGAAGTGGATGACCCCACCTGAAAAAAACCTACCTTCACCCCATGATGTTTTTGTTGGCAGCTGGAAACCCACCAAGAATGACACATTGTCCAAAAGGGTACCTGGATTTGGTGCCACCATAAATTTGCTATATGGTGATCAAGCGTGTGGCGAAGGATCTGATAATGACCAAATGAACAATATTATTTCCCATTATCTTTATTACCTTGATCTCATGGGTGTTGGCAGAGAAGAGGCAGGGCCTAATGAAGTGCTCTCTTGTGCTGAGCAAGCTGCTTTTAAGCCCACTGGCTCACCATCTTCTTCTACAAATTGA 954 0.4486 MNPTWVFVLSIVSMLVVGNGQSSVKTLVKTVKGKKLCDKGWECKGWSVYCCNDTISDYFQTYQFENLFSKRNSPVAHAVGFWDYRSFITAAALYQPLGFGNTGGKTSGMKELAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSPDKYYCDENYKLTYPCTPGVAYYGRGALPIFWNYNYGKIGEALKVNLLDHPEYIEQNATLAFQAAIWKWMTPPEKNLPSPHDVFVGSWKPTKNDTLSKRVPGFGATINLLYGDQACGEGSDNDQMNNIISHYLYYLDLMGVGREEAGPNEVLSCAEQAAFKPTGSPSSSTN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2089 317 Pfam Chitinase class I 63 290 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr1g2089 317 SUPERFAMILY Lysozyme-like 55 306 IPR023346 -
Apr1g2089 317 Gene3D - 63 306 - -
Apr1g2089 317 PANTHER - 7 309 - -
Apr1g2089 317 PIRSF Endochitinase 2 307 IPR016283 GO:0004568|GO:0005975
Apr1g2089 317 Gene3D Endochitinase, domain 2 143 202 - -
Apr1g2089 317 PANTHER CHITINASE-RELATED 7 309 - -
Apr1g2089 317 CDD chitinase_GH19 63 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2089 Apr-Chr1 30427606 30429658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2089 22 306 Glycoside Hydrolase AT3G16920 82.105 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2089 - - gmx:100809617 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2089 1 30427606 30429658 Apr1g2089 1 30427606 30429658 ECH