Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2077 ATGTCACTGAATATGGCTTTGCAGAAGTATGTACCTTCTGCTGATGCACCATCTGTTAATATGAAGCATTTGAGCTTTTCCAGTAAGGTGCCTAAGAAAGCTCAGCTTGAAGTGGCAAATCAGAATCATGACATGGATGTGGATGTTGACCTTAAGGAAGTTTATTTTCTCATTATGCACTTTCTTTCTGCTGGGCCATGTCATAAAACTTATTTACAGTTCTGGAATGAGCTTCTTGAGCATCAACTTTTGCCTAGAAGGTATCATGCTTGGTATTCAAGGACTGGGGCACATAGTGGAGATGAAGATGATGATGGTCTATCATTCCCTTTAAATTACAATATGTTAGTGGAGAGGTATCCACATATTGAAAAGGATCACTTGGTAAAGCTTTTGAAGCAATTGTTATTAAATACAGCCTCCCCATCGCTGGGTATGAGTTCTGGAAATGCTCCAAATGCAGCTGATGTACCTACTCTTCTAGGAAGGGCTTCATTTTCACTTTTGAGCCATGATAGGGAGAAAATGAATCCAGAAATCAAACGACCACCTCCTCATTTGCGTTGGCCTCATATGAAAGCCAATCAGGTTCATGGGCTTAATTTGAGGGAAATTGGGGGTGGTTTCCCAAGACACCACCGTGCACCATCCATACGTGCTGCATGTTATGCCATTGCAAAACCTTCTACCATGGTTCAAAAGATGCAAAATATCAAGAGGTTAAGAGGACACCGTAATGCTGTCTATTGTGCTATATTTGATCGGTCAGGAAGATATGTGATTACTGGTTCAGATGACCGGCTTGTAAAAGTTTGGTCTATGGAAACTGCATATTGTTTGGCCAGTTGCCGTGGACACGACGGTGACATCACTGACTTGGCTGTGAGTTCTAACAACGCTTTAGTTGCATCTTCATCAAATGACTGTGTCATTCGAGTTTGGCGCTTGCCAGATGGCTTACCAATATCAGTTTTGCGAGGACATACTGGAGCTGTTACAGCAATAGCATTTAGTCCCAGACCTAATGCTGTATACCAACTTCTATCTTCCTCTGACGATGGAACTTGTAGGATATGGGATGCAAGGCATACCCAGTCAAGTCCAAGATTATATGTTCCAAGACCTTCTGATTATGTAATTGGGAGGAGCAGTGGCCCATCTTCAAGTACTATGTCACAAAGCCATCAAATTTTTTGCTGTGCATTTAATGCTAATGGAACTGTCTTTGTAACTGGTAGCTCTGATAATCTTGCCAGGGTGTGGAATGCTTGTAAACTTAGTATGGATGACAATGACCAACCAAATCATGAGATAGATGTGCTTTCTGGGCATGAAAATGATGTGAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCTCGGTTTTCCACAGCAGAAACTTGGAAGGAAGATAATATCCCCAAGTTTAAGAATTCTTGGTTGAATCATGACAACATAGTTACTTGCTCTCGTGATGGGAGTGCTATTATATGGATTCCCAAATCTCGCAGGTCACATGGAAAAAGTGGTCGCTGGACACGAGCATATCATCTGAGAGTTCCACCTCCTCCCATGCCTCCTCAACCTCAGAGAGGTGGTCCTCGTCAAAGAATTTTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTTGACAACCGCTTTGTCCTTGCAGCTATAATGGATTGCAGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTACACTCATTGACTGGACATACTGAATCTACATATGTTCTGGATGTTCATCCTTTCAATCCCCGGATAGCTATGAGTGCTGGATATGATGGAAGAACTATCGTGTGGGATATTTGGGAAGGCATGCCTATCCGGATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAGTTTTCTCCGGATGGGACATCAATTATACTTTCGGATGACGTTGGCCAACTATATATATTAAGCACAGGTCAAGGTGAGTCCCAAAAAGATGCCAAATATGATCAGTTCTTTCTTGGTGATTATCGACCTCTCATTCAAGACACCAATGGTAATGTACTAGACCAGGAAACCCAAATTGTACCATATCGACGGAATCTGCAAGATTTGCTCTGTGATTCAGCAATGATACCATACCCTGAACCTTATCAGAGTGAATTTCAGCAAAGACGATTAGGAGCTTTAGGCCTTGAGTGGCGCCCATCTTCACTAAGGCTTGCTGTTGGTCCTGATTTCAGTCTGGACCCAGATTATCATATGCTTCCATTGGCAGACTTGGATGTGCTTACAGAACCACTGCCAGAGTTTACAGATGCCATGGAATGGGAACCTGAAATTGAAGTGTTCAGTGATGATACAGATTCAGAGTATAATGTCACTGAAGATTGCTCTTCTAGGGGTGAGAAAGGATGTTCAAGCTCCAATGTCTCTGGAGATTCAGGGTGCAGCGTGGATAACAGTGAAGGGGATGACACTCACACAGATAGCATACGTAGATCAAAAAGGAAAAAACAGAAGACTGAAACCGAGATCATGACTTCTTCTGGGAGACGTGTGAAAAGGAGGAATTTGGATGAGTGTGATGGCAATACTTTCGGCAGTAACCGAAATAGGAAGGGAAAAGGTGGCCAGAAAATAAGGAGGAGGAAATCTTCTAAATCAAAATCTTCCAGACCTCAAAGAGCTGCTGCACGCAATGCTCTACATTTATTTTCTAAAATTACAGGTACACCAACAGATGGAGAAGAGGATAGTATGGTTGGTGATTTTTCAGATAGTGAATCGCAAGAGTCTAATATTGACAGTGATGAATCTGGCAGAACTTTAGAGAATGACCAACCAAATTATTCTAAGGGAAAAGAAGTATCATTGTATGAATCAGAGGACACAGAGTCTCATGAGTTAACTGAGACTCATGTGAATTCAATGAACAAAAGGAGATTGGTTCTCAAGTTACCAATTCGTGATTCGTCTAAATCCACAAATGAGTTTGATTACCAGGCTGAGTTGGTTGGATCATCATCCAACTTAGTAGGATCATCATCCAAAACTGCACAAGAAGCTACTGATTTTGATACGAGCAGACCAAGTTCTAAAGATTCGGGGTATTATTCTGGTAGTTCAAGTTACCATACAATTGAAAGAATGCATCAAGTAAAACTAGATCAGCCAGAAGACCATGTAGACATACTTGGGAAAATTAGATGGGGAATGGTTAGGGCTCGTTCATCAAAACCTCTGAGAGTGGGAGAAGCTATGCTACCAAACACAAATCCCAATTCTGTAAAGTGTCCAAATCATCTAAATGAAAAAGAAAATGGTAGTACGGAGAAAAAGGACAAGGATTTCAGTACATCAACCTTTGCTTTAGCAATCCAAAATGATAATAATAAGGTAGATAGTTTGACAGAAGAAATTAATGAAAATTGTGCCGGTACAATTTCACAGACTTTTAATCCTACAGAGAATGAAGAGATCACAGCTTCCGGGAATTGCAGGGACAAAGATGAATCACTAATTTGTGCTTACATGATTCCTCATGATACTGTTCCTGCTTCCATCAGCTATAGTGGGGTTGACCAATTGCCTAAACCAAATATTGGTTTTCCTTCTGTTTCAACAAAGCTAAGGTCTAAAAGGGGTTGTAGGGATCCTGAAAGTCCTTCCAAGCATGAAACCAGATCTTCAGTGCTAAAGAATAATGTATGTAGCACAAATGGTTATGTTAATTTGAACAATGAACAGCATGAGGTTGTGGTTGAGGATGATGACAACACTAGGGTAACAGCTAATCAGGGAGAAAACGGATCTCAAGAAATAGGTCCTCAGATTAAGCAAAATAGTACTTCACATGATTTGCCAGAGCCACATTCACATAGAGATAGAATGTATAAAGCTGTTTACAGAAGATCAAGATCACATAGGGCTGTGACTAATTTAGCTGATGGTAGTGACATGGGAAAATCTACTTCAAATGGGGGCAACAATAATTTCAATGCAGCGGCAGATTTCAGTAATGGCACAAATGAGGCCATTCATACCAATCGATCCTTAGAGCTGGAACCAACTACTTGTGACCCAAATAATGAGCGGAATAATCTCAAAGTGCAGCAAGGACATGGAAACCGTATAGTTAGAAGTCCACAGGATGTATCCACAAATGGAGGACAGTTCACAGAAGAAGAAAGGGGTTCTTGTTCAAAATTGACTGTTGGTTTGAGGTCTACTAGGAGTCGGAGATCTAGTTATAATATTCGTGAGACTAGTCCTGTAAATAGAAGGAAATCACAGCAATCAGCTAGCAAAGGTTCATGGTTGCTGTTATCGACCCATGAGGAAGGATGCAGATTTATTCCACAACAGGGAGATGAAGTTGTATATTTGAGACAGGGGCACCAGGAGTATATAGATTATTGCCGTAGAAGAGAATCAGGGCCTTGGGCATCACCAAAGGAACATATAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTAGAGTATTCCCATGTTCCAGGGTCTGGTGATAGCTGCTGCAAAATGACACTTGAGTTTGTAGATCCTAATTCAAGTGTTGTTGGCAAATCTTTTAAGTTAACCCTACCTGAAGTGACTAGTTTCCCAGATTTTCTTGTTGAAAGAACTAGGTTTGATGCTGCTATGCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAAGAATGAGGATAATTCCTCTGGTAATTGGTGGGATGGTCGAATCCTGTGCGTGGAAGCCAAGTCTTCCGAATTTCCAGAAAGTCCATGGGAGAGGTATACTGTTCGGTACAAGAGTGACCTCACTGAAACCCATTTGCATAGTCCTTGGGAGCTTTTTGATGCTGATACTGAATGGGAACAACCTCATATTGATGATAATAAGAGAAATAAACTGCTATCCGCTCTCACCAAATTACAGCAGTCAGGCAACACAGTTCAGGATCGTTATGGGATACATGAATTGAAGAAAATTTCAAATAAGTCTAAATTTATAAACAGGTTTCCTGTTCCTCTGTCTCTGGAATTGATACAATCAAGGTTGGAGAATAACTATTACCGTAGTTTGGAGGCACTGAAGCATGATGTGACAGTTTTACTGTCTAATGCCACCTCCTTTCTTGAAAAGGATGCAGAGATGTCAACAAAAATCAAACGCCTATCAGAATGGTTCACACGGACATTATCATCTTTATAG 5217 0.41 MSLNMALQKYVPSADAPSVNMKHLSFSSKVPKKAQLEVANQNHDMDVDVDLKEVYFLIMHFLSAGPCHKTYLQFWNELLEHQLLPRRYHAWYSRTGAHSGDEDDDGLSFPLNYNMLVERYPHIEKDHLVKLLKQLLLNTASPSLGMSSGNAPNAADVPTLLGRASFSLLSHDREKMNPEIKRPPPHLRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRSGRYVITGSDDRLVKVWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARHTQSSPRLYVPRPSDYVIGRSSGPSSSTMSQSHQIFCCAFNANGTVFVTGSSDNLARVWNACKLSMDDNDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSTAETWKEDNIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGMPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTNGNVLDQETQIVPYRRNLQDLLCDSAMIPYPEPYQSEFQQRRLGALGLEWRPSSLRLAVGPDFSLDPDYHMLPLADLDVLTEPLPEFTDAMEWEPEIEVFSDDTDSEYNVTEDCSSRGEKGCSSSNVSGDSGCSVDNSEGDDTHTDSIRRSKRKKQKTETEIMTSSGRRVKRRNLDECDGNTFGSNRNRKGKGGQKIRRRKSSKSKSSRPQRAAARNALHLFSKITGTPTDGEEDSMVGDFSDSESQESNIDSDESGRTLENDQPNYSKGKEVSLYESEDTESHELTETHVNSMNKRRLVLKLPIRDSSKSTNEFDYQAELVGSSSNLVGSSSKTAQEATDFDTSRPSSKDSGYYSGSSSYHTIERMHQVKLDQPEDHVDILGKIRWGMVRARSSKPLRVGEAMLPNTNPNSVKCPNHLNEKENGSTEKKDKDFSTSTFALAIQNDNNKVDSLTEEINENCAGTISQTFNPTENEEITASGNCRDKDESLICAYMIPHDTVPASISYSGVDQLPKPNIGFPSVSTKLRSKRGCRDPESPSKHETRSSVLKNNVCSTNGYVNLNNEQHEVVVEDDDNTRVTANQGENGSQEIGPQIKQNSTSHDLPEPHSHRDRMYKAVYRRSRSHRAVTNLADGSDMGKSTSNGGNNNFNAAADFSNGTNEAIHTNRSLELEPTTCDPNNERNNLKVQQGHGNRIVRSPQDVSTNGGQFTEEERGSCSKLTVGLRSTRSRRSSYNIRETSPVNRRKSQQSASKGSWLLLSTHEEGCRFIPQQGDEVVYLRQGHQEYIDYCRRRESGPWASPKEHIRAVEYCRVQSLEYSHVPGSGDSCCKMTLEFVDPNSSVVGKSFKLTLPEVTSFPDFLVERTRFDAAMQRNWTRRDKCRVWWKNEDNSSGNWWDGRILCVEAKSSEFPESPWERYTVRYKSDLTETHLHSPWELFDADTEWEQPHIDDNKRNKLLSALTKLQQSGNTVQDRYGIHELKKISNKSKFINRFPVPLSLELIQSRLENNYYRSLEALKHDVTVLLSNATSFLEKDAEMSTKIKRLSEWFTRTLSSL* 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2077 1738 SUPERFAMILY Bromodomain 1671 1736 IPR036427 GO:0005515
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 1378 1433 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 1210 1226 - -
Apr1g2077 1738 Gene3D - 1637 1738 IPR036427 GO:0005515
Apr1g2077 1738 Gene3D - 387 460 IPR015943 GO:0005515
Apr1g2077 1738 ProSiteProfiles Bromodomain profile. 1678 1721 IPR001487 GO:0005515
Apr1g2077 1738 Gene3D - 223 384 IPR015943 GO:0005515
Apr1g2077 1738 CDD Bromo_WDR9_I_like 1610 1738 - -
Apr1g2077 1738 SMART WD40_4 276 315 IPR001680 GO:0005515
Apr1g2077 1738 SMART WD40_4 434 499 IPR001680 GO:0005515
Apr1g2077 1738 SMART WD40_4 318 360 IPR001680 GO:0005515
Apr1g2077 1738 SMART WD40_4 234 273 IPR001680 GO:0005515
Apr1g2077 1738 SMART WD40_4 384 422 IPR001680 GO:0005515
Apr1g2077 1738 SMART WD40_4 573 613 IPR001680 GO:0005515
Apr1g2077 1738 SMART WD40_4 532 570 IPR001680 GO:0005515
Apr1g2077 1738 MobiDBLite consensus disorder prediction 798 818 - -
Apr1g2077 1738 Gene3D - 475 671 IPR015943 GO:0005515
Apr1g2077 1738 PANTHER WD REPEAT DOMAIN 9 13 1738 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 1261 1292 - -
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 316 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 783 972 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 1203 1228 - -
Apr1g2077 1738 CDD WD40 237 613 - -
Apr1g2077 1738 Pfam WD domain, G-beta repeat 321 360 IPR001680 GO:0005515
Apr1g2077 1738 Pfam WD domain, G-beta repeat 574 613 IPR001680 GO:0005515
Apr1g2077 1738 Pfam WD domain, G-beta repeat 394 422 IPR001680 GO:0005515
Apr1g2077 1738 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Apr1g2077 1738 Pfam WD domain, G-beta repeat 236 273 IPR001680 GO:0005515
Apr1g2077 1738 MobiDBLite consensus disorder prediction 1083 1115 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 955 972 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 1087 1102 - -
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 614 IPR001680 GO:0005515
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 369 IPR001680 GO:0005515
Apr1g2077 1738 MobiDBLite consensus disorder prediction 1262 1284 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 819 860 - -
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Apr1g2077 1738 MobiDBLite consensus disorder prediction 1008 1041 - -
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Apr1g2077 1738 ProSitePatterns Trp-Asp (WD) repeats signature. 600 614 IPR019775 -
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 422 - -
Apr1g2077 1738 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 13 1738 - -
Apr1g2077 1738 MobiDBLite consensus disorder prediction 873 889 - -
Apr1g2077 1738 Pfam Bromodomain 1674 1720 IPR001487 GO:0005515
Apr1g2077 1738 SUPERFAMILY WD40 repeat-like 232 656 IPR036322 GO:0005515
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 360 - -
Apr1g2077 1738 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 422 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2077 Apr-Chr1 30298610 30318550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2077 233 422 Miscellaneous Gene Families AT5G08390 22.513 2.91e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2077 K11797 - gmx:100818665 2971.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2077 1 30298610 30318550 Apr1g2077 1 30298610 30318550 ECH