Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2038 ATGGATAACCAAAGGTCCATTTCTCTGCTTCAGTTCATGGCTGATGAAGGTCTTGTTCCATCGCCAGAAGAGGAAGAGAAAAGGAAATCTGCTATTCAGAAGCTCAAACAGATAGTCTCATCATGGATCAAGAAGGTAGCATGGCAGCATCGACTGCCAAAGCACCAGATCGCTGTTACTTCTGCCACCATATTGACATATGGATCTTATGGCCTTGGAGTTCACAGCTCAGAGTCTGACATTGATGCTTTGTGCGTTGCTCCTTTCTTTGCCACAATTGCAGAAGACTTTTTTGTTGTGTTGCATGACATGCTTAAAAGGAGACCTGAAGTATCAGAGATTCTGTGTGTCAAGAGTGCAAAAGTCCCCTTAATGCGTTTTAAATTCGATGGGATTTCCATTGATCTTCCATATGCTCAGCTTAAAGTACTATATGTTCCTGAGAACGTTGACATACTAAATCCATTCTTCATGAGGAACATTGATGATACCAGCTGGAAAAGCTTATCTGGGGTGCGTGCAAACAAACGCATTCTTCAGCTAGTCCCAAATATTCAGAAATTTCAATCTATGGTACGATGTCTTAAATTATGGGCAAAAAGAAGAGGAGTGTATGGAACTTTGCTTGGTTACTTGGGAGGAGTTCACTTGGCAGTTCTTGCAGCTTATGTTTGTCAAAGATATCCTGATGTCACCTTAAATGCTCTAATTATGAACTTTTTTCGAACATTCGCATATTGGCCATGGCCTACACCAGTGATGCTGCAGGAAGGAATGTTTCTAACAGCTATAGATGCTATAGAAACACGTTCCTTCATGCCCATTCAGTTGCCATCTACCCCTCATCAGTATTGTCATTCAAATATAACTAAAAGCACATTTTATCGGATCAGGACTGAGTTTTTCCGTGGCCATAACATGACAAGGGATCTTTTGAGGCCAGATTTTATTTGGGACGATGTATTTGAGCCTTTTCCATACTCAAAAAGATACTCCCAATTTGTCAAGATTTACCTCTCTACTCTTGAACAGCATGAGCTTGGAGACTGGGTTGGTTGGGTCAAGTCACGCTTTCGTGGTCTTCTTGGAATGCTGGAGGGTATCCAGGGATTTTGTGACCCCAATCCTACAGAATATGTTGAAGATGAGAAAAGTGAGCCAAATGTGGTTTTCTTCTGGGGGTTGCAACCTGGGAAGAATGACTTGATAGACATTGATTTGGTAGAGGGAGAGTTCATGAAGATTATTGGCAATGGCTATGAAGGTTCTCATGGGAAGATGGAGTTGTCAGTCCTATTAGCTTCTCATTTGCCTAAGAATGCTCAAGTTGATGATGGGACTGTTAAGGGTAGAAAAACATGTTGGAAAATAATTGATTATGATAAGAAAAGGAACATGGTCTACTCACAGCATCTTCCACATTGCCTTATTGGCCATGTGTCACCTAGTGGTGAGGCTGAATGCCTCAGTTCTAGTGGCTAG 1482 0.4163 MDNQRSISLLQFMADEGLVPSPEEEEKRKSAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGLGVHSSESDIDALCVAPFFATIAEDFFVVLHDMLKRRPEVSEILCVKSAKVPLMRFKFDGISIDLPYAQLKVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANKRILQLVPNIQKFQSMVRCLKLWAKRRGVYGTLLGYLGGVHLAVLAAYVCQRYPDVTLNALIMNFFRTFAYWPWPTPVMLQEGMFLTAIDAIETRSFMPIQLPSTPHQYCHSNITKSTFYRIRTEFFRGHNMTRDLLRPDFIWDDVFEPFPYSKRYSQFVKIYLSTLEQHELGDWVGWVKSRFRGLLGMLEGIQGFCDPNPTEYVEDEKSEPNVVFFWGLQPGKNDLIDIDLVEGEFMKIIGNGYEGSHGKMELSVLLASHLPKNAQVDDGTVKGRKTCWKIIDYDKKRNMVYSQHLPHCLIGHVSPSGEAECLSSSG* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2038 493 Pfam Poly(A) polymerase central domain 2 324 IPR007012 GO:0004652|GO:0043631
Apr1g2038 493 SUPERFAMILY PAP/OAS1 substrate-binding domain 183 324 - -
Apr1g2038 493 CDD NT_PAP_TUTase 27 141 - -
Apr1g2038 493 Gene3D - 2 322 - -
Apr1g2038 493 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 330 432 IPR011068 GO:0003723|GO:0016779|GO:0031123
Apr1g2038 493 Gene3D Beta Polymerase, domain 2 20 176 IPR043519 -
Apr1g2038 493 Gene3D Poly(A) polymerase predicted RNA binding domain 327 432 - -
Apr1g2038 493 PANTHER NUCLEAR POLY(A) POLYMERASE 3 1 482 - -
Apr1g2038 493 SUPERFAMILY Nucleotidyltransferase 3 179 IPR043519 -
Apr1g2038 493 PANTHER POLY A POLYMERASE 1 482 - -
Apr1g2038 493 PIRSF PolyA_polymerase 1 462 IPR014492 GO:0004652|GO:0005634|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2038 Apr-Chr1 29934435 29939028 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2038 K14376 - jre:109010780 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2038 1 29934435 29939028 Apr1g2038 1 29934435 29939028 ECH