Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2029 ATGTTCTTCAGCGGCGATCCTTCTACTCGTAAGCGTGTTGATTTAGGTGGTCGAAGCTCGAAGGAAAGGGACAGGAAGAATCTTCTAGAACAGACGCGATTGGAGCGGAATCGGCGTTTGTGGCTGCGCCAGCAAAACTCTGCTGCACTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAATGGAACAGTCTATGGTGCGAGAGAAATTCCTAACAATCTATGGGAAGAAATGCCTGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGCCAGTTCCTCTATTTCTTTAATGCAGAAAATGTTGATGATTTTTTAATTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCAAGAGAGTGGGGATGTTGTGAGACTTTTTGCTGGTGTGGATTACTCATCCACAAGTGCTTTGGTGAACTACCGAGTGAAGCAAATTGTATATACTTGTATTCGTGCCATACATCAGAATAGAAATAAGTTGAAGGACCAGCTTTTATTCACTCTGGTGGAATCTAATGTGTCAGCTACTCCGTTATTGGAAGTCTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAAGATAGTAGGATATCTGTCTCAAAACAATGCTTTCAGCCTACTTAGGGAGATTGTTCTTACAGGAAAGGATAATGCTCAAAATTGTATTTACAGTGAAAAGGAATCATCATTGGAGCGTGTGCTTACCATTGCAATATGTCACATTGGTCAGAAGCCATGTATCTGTTCACATGCTGATCCAGCACATAGCATCTCATCACAGATCCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAACAGGTTTTCGCAAAACAGGGCCTGAGCCAACATTACATTCATCAAATGGCAAAATTTGTGCCAAATCTGATCAGCTGTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGCGGAATTGCTCTGGCTCAACCTGACTGTTCATTTGAAATGGCCATAGACCTCGCTGCTGTCACTACGTTTTTGCTGGAGGGGCTCCCATCTTTGACAAGATCTGATGGTAGAGAAATCATGGAAGTAGCTTTGGACAGGAAATTGAATCAACAAATTTGTAATGCCATAGATACTCGCTTCCTTCTGCAATTGACAAATATATTATTTAGAGATTTTTCATTGGCCAATGGTTCAGATTTTGAGCCAGATGATAGGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGATTTTTATATGTTATCTTCAACAAATTGCCTCTTGAAAGGATTATGACTGTGCTTGCCTACAGAACCGAACTTGTTCCTATGCTTTGGAATTTTATGAAGCGGTGCCACGAGAATAAAAAATGGTCATCTTTGTCTGAGCGGTTATCATACCTCTCGGGTGATGCACCTGGTTGGCTGTTGCCTCTTGCTGTATTCTGTCCTGTTTACAAGCATATGCTTATGATAGTTGATAATGAGGAATATTATGAGCAAGAGAAACCACTATCACTGAAGGATATTAGAAGCCTCATTGTTCTGTTGAGGCAGGCTCTATGGCAGTTGTTGTGGGTGAATCATACGACGTCTGCTAATTCGGTCAAATCAGTTCTTGTTAGCACAGCTAGTAAAAAGCAGTCTATTGAAGCCATTCAACAGAGGGTTAGCATTGTAGTCTCTGAACTACTGTCCCAGCTTCAAGATTGGAACAACAGACGACAGTTTACATCCCCCAGTGACTTCCATGCTGATGGGGTGAATGACTTCTTTATCTCTCAGGCTGTTATTGAAAATACTCGAGCAAATGAAATTTTGAAACAGGCAGCTTTTTTGATACCATTTACTAGCAGGGTTAAGATTTTCACTTCTCAACTAGCTGCTGCTAGGCAAAGACATGGATCTCATGCTGTATTTACTAGAAACCGGTTTAGAATAAGGAGGGATCATATTTTGGAAGATGCTTATAATCAAATGAGCCAGTTGTCAGAAGATGATCTTCGAGGATTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAATATCACACGTGCTGCCTTTGATGTGCAATATGGATTGTTTAAGGAAACAGCAGATCACCTACTTTATCCTAACCCTGGATCAGGAATGATACATGAACAGCATCTCCAATTTTTCCACTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTTTGGTTGATTTACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTTATCTTTCTGAAGCATTATAAGGGTGATGTTTCGGAGTTGGAACTATACTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTTCGTGTCACTAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAACCATCGCTTGAACTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGATGCATACAAACTATGCAGGAGGCTATCATAGTGAGCATTATGTGATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAAAAAGAAATTTTTGAAGTTTGTGACAGGTTGTTCTAGGGGACCATTGCTTGGATTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCCGGTGGTAATGCTTCAGAGGAAGCTCTTGACAGATTACCCACCTCAGCTACTTGTATGAATCTGCTAAAGCTTCCACCTTATAGAAGTAAGGAGCAAATGGAAACCAAATTACTTTATGCCATAAATGCTGATGCTGGCTTTGATTTGAGTTAA 3057 0.402 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRGRKVVRMEQSMVREKFLTIYGKKCLNLDRNAFGPDSDFLRQFLYFFNAENVDDFLILVQICRLLQQFVQESGDVVRLFAGVDYSSTSALVNYRVKQIVYTCIRAIHQNRNKLKDQLLFTLVESNVSATPLLEVLVLLIDPKLPWSCKIVGYLSQNNAFSLLREIVLTGKDNAQNCIYSEKESSLERVLTIAICHIGQKPCICSHADPAHSISSQILTIPFLWHVFPNLKQVFAKQGLSQHYIHQMAKFVPNLISCLPKDISDEFPTYACLLGNILETGGIALAQPDCSFEMAIDLAAVTTFLLEGLPSLTRSDGREIMEVALDRKLNQQICNAIDTRFLLQLTNILFRDFSLANGSDFEPDDREVAAVGAVCGFLYVIFNKLPLERIMTVLAYRTELVPMLWNFMKRCHENKKWSSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIVLLRQALWQLLWVNHTTSANSVKSVLVSTASKKQSIEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVIENTRANEILKQAAFLIPFTSRVKIFTSQLAAARQRHGSHAVFTRNRFRIRRDHILEDAYNQMSQLSEDDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYKGDVSELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRMHTNYAGGYHSEHYVIEMFWEVLKGFSLENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYRSKEQMETKLLYAINADAGFDLS* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2029 1018 CDD HECTc 656 1016 IPR000569 GO:0004842
Apr1g2029 1018 Gene3D Hect, E3 ligase catalytic domain 900 1017 - -
Apr1g2029 1018 Gene3D Hect, E3 ligase catalytic domain 782 861 - -
Apr1g2029 1018 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Apr1g2029 1018 Gene3D Hect, E3 ligase catalytic domains 658 896 - -
Apr1g2029 1018 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1018 IPR044611 GO:0000209|GO:0061630
Apr1g2029 1018 SMART hect_3 675 1018 IPR000569 GO:0004842
Apr1g2029 1018 SUPERFAMILY Hect, E3 ligase catalytic domain 648 1010 IPR035983 GO:0004842
Apr1g2029 1018 Pfam HECT-domain (ubiquitin-transferase) 713 1018 IPR000569 GO:0004842
Apr1g2029 1018 MobiDBLite consensus disorder prediction 1 22 - -
Apr1g2029 1018 ProSiteProfiles HECT domain profile. 677 1018 IPR000569 GO:0004842
Apr1g2029 1018 PANTHER BNAC01G43970D PROTEIN 1 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2029 Apr-Chr1 29776807 29805015 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2029 K10589 - gmx:100787467 1841.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2029 1 29776807 29805015 Apr1g2029 1 29776807 29805015 ECH