Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2028 ATGGTGAAGGTGCGGATGAACACCGCCGATGTGGCGGCGGAGGTGAAATGCCTCCGTAGGCTAATCGGAATGCGATGTTCCAATGTCTACGATCTCTCTCCTAAGACCTACGTCTTCAAGCTCATGAACAGCAGCGGAGTCTCCGAATCCGGCGAGAGCGAGAAGGTTCTTCTTCTCATCGAAAGTGGAGTCAGATTGCACACTACTCTCTACATGCGCGACAAAAGCAACACTCCTTCTGGGTTCACTCTCAAATTGAGGAAGCATATTCGAACTAGGAGGCTCGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTCTTTCAATTTGGACTTGGAGAGAATGCAAACTATGTTATATTGGAGCTATATGCCCAGGGGAACATCCTCCTCACTGATTCTAATTTTACTGTCATGACTCTACTACGATCTCACAGGGATGATGATAAAGGGCTTGCAATCATGTCACGCCATCGGTATCCTACGGAAAGTTGTCGAGTTTTTGAAAGAACTACTATTGAAAAGTTGCATGCAGCCCTGATGTCTTCCAAGGAAGATGATAATGATGAGGCTGTTAAGGTCAATGGAGATGGGACTAATACTTCTAATGTCACAAAAGAGAAGCAGGGAACACGCAAAGGTGGGAAATCATCTGCCACGTTGAAGATTGTCCTTGGGGAGGCACTTGGTTATGGACCTGCACTTTCTGAACACATAATATTAGATGCTGGCTTAATCCCCAATACAAAAGTTCCCAAAGATAAAACGTGGGATGATGCTACTGTTCAAGCTTTGGTCCAAGCTGTTGCAAAGTTTGAAGATTGGATGGAGGATATTATTTCAGGTAATATAGTTCCTGAAGGATACATTTTGATGCAGAACAAAAATTTGGGGAAGGATTCTTCCATATCTCAACCAGGAAGTGTTAGCCAGATGTATGATGAGTTCTGCCCCATTTTACTCAACCAGTTTAAGTCAAGGGATTATACAAAGTTTGAGACATTTGATGCAGCCTTAGATGAGTTCTATAGCAATATTGAGAGTCAAAGGGCTGAACAACAGCAGAAAGCCAAAGAAAACTCAGCTGCTCAGAAACTTAATAAGATACGCCAGGATCAGGAAAATAGAGTGCATGTTTTGAGGAAAGAAGCCAATCATTGTGTTAAGATGGCAGAACTGATAGAATACAACTTAGAAGATGTGGATGCTGCTATATTGGCTGTTCGTGTAGCTCTTGCAAAGGGTATGAACTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAACCCAGTGGCAGGTCTCATTGACAAGCTCCATCTTGAGAGGAACTGCATGACTTTACTGTTGGCCAACAATCTTGATGAAATGGATGATGATGAGAAGACACTCCCTGTGGATAAGGTTGAAGTTGATTTAGCTCTCTCCGCACATGCCAATGCTAGGAGGTGGTATGAACTGAAGAAAAGGCAAGAGAGTAAACAGGAAAAGACTATAACTGCCCATGAAAAAGCTTTTAAAGCTGCAGAGAGAAAGACTCGATTACAGCTTAGTCAGGAAAAAACTGTTGCCACAATTTCACATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAACTATTTGGTTATCAGTGGACGCGATGCACAGCAAAATGAGATGATAGTGAAGCGTTATATGTCAAAAGGAGATCTCTATGTACATGCTGATCTGCATGGAGCTTCTAGTACAGTTATCAAGAATCACAAGCCTGCGCAACCAGTTCCACCACTGACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCAAAAATTGTTACTAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCTCCCACAGGTGAATATCTGACAGTAGGGAGTTTCATGATCCGGGGAAAGAAAAACTTTCTTCCACCACATCCTCTTATCATGGGTTTTGGCCTACTATTTTGCTTGGATGAGAGTTCCTTGGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAAGCAATAGATGATTATGAAGAAACTGGTCCTCTCGAAGAAAAATCTGATTCAGAGTCTGAGAAGGATGTCACTGATAAACCTTTATCAGAAGACTTTGCTGCAGACTCATTGCAAACTAGTTTGGCTACTACTATCAATGACAAAACTGCAGTTTCACAGGATTTTCCTGTGAAAGAGACAAGTATTATGAACATGGTTGATAGGGAGAAATTATCTGACATTGGTGGAACTGGCTTAGCATCTGTTACCCCTCAACTTGAGGAACTTATTGATCGAGCTTTAGGACTTGGATCTGTTGCTAAATCAAGTAAAAATTTTGAAGTTGAGAATTCGCAAAATGATTTAGGCAGTGAGCACCTATTTGAACAGAGCAAAGCTGCAGTAAGGGATAAACCTTATGTGTCAAAAGCTGAGAGAAGAAAGTTTAAAAAAGAACAGAAACATGAAGAAGCAGATTCAAATGTTGAACATGGAAAGGATGAATCAAAACTGAAAGATATTTCTGCTAATCTAGCTGCAAAAGAAGTTCAAAATTTGAAGAAAGGTGGAGGTCAAAAAATCAGCCGTGGACAGAGGAGCAAACTTAAGAAGATAAAGGAAAAATATGCTGACCAAGATGAGGAAGAAAGGAGCATCCGAATGGCATTGTTGGCTTCTTCTGGAAAATCAATCAAGAAGGAAGAGACATCATCTAGAAATGAAGCATTGGACAAGGGGGAAAAACCCAGCAGTGGGCCTGCAGAAGCTCCAAAAATATGTTACAAGTGTAAAAAGGCAGGTCACTTATCTCGTGACTGTAAGGAGCAAACAGATGATCTTGCTATTGACACTTCCCAAGCAGATAGGGTGGCAATGGAAGAAGATGATATCCATGAAATAGGAGAAGAAGAGAAAGAAAAGCTAAATGACGTGGATTACTTGACAGGGAATCCACTTCCTAATGACATTCTCTTATATGCTGTTCCTGTCTGTGGTCCATACAATGCAATTCAGTCTTACAAATACCGGGTGAAGATAATTCCTGGACCAGCGAAGAAAGGGAAAGCTGCAAAGACTGCAATGAACTTGTTCAGCCACATGTCAGAAGCCACAAACCGGGAGAAGGAGTTGATGAAAGCTTGCACAGATCCTGAGCTAGTTGCTTCAATTATTGGTAATGTAAAGATATCAGCAGCTGGCCTTACTCAATTGAAACAAAAGCAAAAAAAGGGCAAGAAGAACAGCAAACAAGAGAGTTAG 3312 0.4182 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYVFKLMNSSGVSESGESEKVLLLIESGVRLHTTLYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENANYVILELYAQGNILLTDSNFTVMTLLRSHRDDDKGLAIMSRHRYPTESCRVFERTTIEKLHAALMSSKEDDNDEAVKVNGDGTNTSNVTKEKQGTRKGGKSSATLKIVLGEALGYGPALSEHIILDAGLIPNTKVPKDKTWDDATVQALVQAVAKFEDWMEDIISGNIVPEGYILMQNKNLGKDSSISQPGSVSQMYDEFCPILLNQFKSRDYTKFETFDAALDEFYSNIESQRAEQQQKAKENSAAQKLNKIRQDQENRVHVLRKEANHCVKMAELIEYNLEDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLANNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYELKKRQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHKPAQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFCLDESSLGSHLNERRVRGEEEAIDDYEETGPLEEKSDSESEKDVTDKPLSEDFAADSLQTSLATTINDKTAVSQDFPVKETSIMNMVDREKLSDIGGTGLASVTPQLEELIDRALGLGSVAKSSKNFEVENSQNDLGSEHLFEQSKAAVRDKPYVSKAERRKFKKEQKHEEADSNVEHGKDESKLKDISANLAAKEVQNLKKGGGQKISRGQRSKLKKIKEKYADQDEEERSIRMALLASSGKSIKKEETSSRNEALDKGEKPSSGPAEAPKICYKCKKAGHLSRDCKEQTDDLAIDTSQADRVAMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAIQSYKYRVKIIPGPAKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVASIIGNVKISAAGLTQLKQKQKKGKKNSKQES* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2028 1103 MobiDBLite consensus disorder prediction 823 853 - -
Apr1g2028 1103 ProSiteProfiles Zinc finger CCHC-type profile. 944 959 IPR001878 GO:0003676|GO:0008270
Apr1g2028 1103 Gene3D - 916 965 - -
Apr1g2028 1103 MobiDBLite consensus disorder prediction 888 904 - -
Apr1g2028 1103 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1091 - -
Apr1g2028 1103 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Apr1g2028 1103 Coils Coil 357 384 - -
Apr1g2028 1103 MobiDBLite consensus disorder prediction 688 716 - -
Apr1g2028 1103 MobiDBLite consensus disorder prediction 188 215 - -
Apr1g2028 1103 MobiDBLite consensus disorder prediction 195 209 - -
Apr1g2028 1103 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Apr1g2028 1103 Pfam NFACT N-terminal and middle domains 10 183 - -
Apr1g2028 1103 Pfam NFACT N-terminal and middle domains 219 531 - -
Apr1g2028 1103 PANTHER - 3 1091 - -
Apr1g2028 1103 Pfam Zinc knuckle 943 959 IPR001878 GO:0003676|GO:0008270
Apr1g2028 1103 SUPERFAMILY Retrovirus zinc finger-like domains 934 962 IPR036875 GO:0003676|GO:0008270
Apr1g2028 1103 Pfam NFACT protein C-terminal domain 988 1081 IPR021846 -
Apr1g2028 1103 SMART c2hcfinal6 943 959 IPR001878 GO:0003676|GO:0008270
Apr1g2028 1103 MobiDBLite consensus disorder prediction 916 932 - -
Apr1g2028 1103 MobiDBLite consensus disorder prediction 867 941 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2028 K24971 - gmx:100807437 1907.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2028 1 29759306 29774075 Apr1g2028 1 29759306 29774075 ECH