LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g1064	ATGGGCTGCTTCAACTCTACTGTAAGAAGACAATTTCCTGGCCACGAGGACCCAGTAACTCTTTCATCACACACCGCATTCAGCGTTAGTGAGGTTGAAGCACTGTTTGAACTTTTTAAGAGCATCAGCAGTTCTGTTGTCGACGATGGATTGATCAGCAAGCAGGAAGAATTTCAGTTGGCACTTTTCAAGAATAGAAAAAAGGAGAATCTCTTTGCAAATCGGATCTTTGATCTGTTTGATGTTAAGAAGAAGGGATTCATTGATTTTGGTGACTTTGTTAGATCACTCAATGTCTTCCACCCAAATGCTCCACTAGAAGACAAGATAGATTTTTCGTTTAGGCTCTATGACTTGGACAATACAGGCTTTATAGAGCGTGAAGAGGTCAAGTTAATGTTAATTGCACTTCTTTGTGAGTCTGAAATGAAATTGGCGGATGAGACAATAGAAAAAATACTTGATAAGACTTTCTTGGATGCTGATCTGAATCAAGACGGGAAAATAGACAAGTTCGAATGGCAAAACTTCGTTTCTAAAAATCCATCATTATTGAAAATCATGACCCTTCCTTATCTGAGGGACATTACAACAACTTTCCCGAGTTTTGTATTTAATTCCGAGGTGGATGAAATTGTTACATGA	645	0.3845	MGCFNSTVRRQFPGHEDPVTLSSHTAFSVSEVEALFELFKSISSSVVDDGLISKQEEFQLALFKNRKKENLFANRIFDLFDVKKKGFIDFGDFVRSLNVFHPNAPLEDKIDFSFRLYDLDNTGFIEREEVKLMLIALLCESEMKLADETIEKILDKTFLDADLNQDGKIDKFEWQNFVSKNPSLLKIMTLPYLRDITTTFPSFVFNSEVDEIVT*	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g1064	214	CDD	EFh	109	179	IPR002048	GO:0005509
	Apr1g1064	214	ProSitePatterns	EF-hand calcium-binding domain.	118	130	IPR018247	-
	Apr1g1064	214	ProSitePatterns	EF-hand calcium-binding domain.	162	174	IPR018247	-
	Apr1g1064	214	PANTHER	CALCINEURIN B	1	214	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Apr1g1064	214	Pfam	EF hand	154	178	IPR002048	GO:0005509
	Apr1g1064	214	SMART	efh_1	72	100	IPR002048	GO:0005509
	Apr1g1064	214	SMART	efh_1	153	181	IPR002048	GO:0005509
	Apr1g1064	214	SMART	efh_1	109	137	IPR002048	GO:0005509
	Apr1g1064	214	Gene3D	-	17	212	-	-
	Apr1g1064	214	SUPERFAMILY	EF-hand	22	204	IPR011992	-
	Apr1g1064	214	ProSiteProfiles	EF-hand calcium-binding domain profile.	105	140	IPR002048	GO:0005509
	Apr1g1064	214	PRINTS	Recoverin family signature	76	97	-	-
	Apr1g1064	214	PRINTS	Recoverin family signature	143	158	-	-
	Apr1g1064	214	PRINTS	Recoverin family signature	169	189	-	-
	Apr1g1064	214	ProSiteProfiles	EF-hand calcium-binding domain profile.	68	103	IPR002048	GO:0005509
	Apr1g1064	214	PANTHER	BNAC07G34450D PROTEIN	1	214	-	-
	Apr1g1064	214	ProSiteProfiles	EF-hand calcium-binding domain profile.	149	184	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g1064	Apr-Chr1	18784713	18791130	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr1g1064	1	214	EF-hand Containing Proteins	AT4G17615	84.112	1.30e-130	364

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g1064	K06268		-	vvi:100243294	381.333