Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0994 ATGGATAACAGTGCTTCGGAGCAGACAGTGCAAGATGGCAAACACTACAGGCACCTCAATTCCCTCATCGTCGCTCATCTTCGCGACAACAATCTCACTCAGGCTGCGAGTGCGGTTGCTACCGCAACTATGACACCTCTGAATGTGGAAGCCCCACCAAACAGGCTTCTCGACTTGCTTGCTAAGGGGCTTTCTGCTGAGAAAGAAGACATCAGAAGAGGCACTTCGTCTTCACCCTTCCACAATTTTGCAACGTCGCTGCCCCTTCCTCACACAAAAGCCGTTGATTTCAGCTCTGTGCCAGATATGAAAGGTTCCTCAAAGAGCTTCCCGAAGCATGAAACACGACACCTTTCAGAACACAAGAATATTGCCAGATGTGCTAGATTTAGTGCTGATGGAAGGTTTGTTGCCACCGGAAGTGCAGATACATCAATAAAACTATTTGAGGTTTCGAAGATCAAGCAGATGTTGCTCCCAGATGCAAAGGATGGTCCTGTGCGGCCTGTCATACGAACATATTATGATCATATACAACCAATAAATGATTTGGATTTTCATCCACAAGGTACTATCCTGATTTCTGGATCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAATCCAGTGCAAAGAGGGCATACAGGGTTATTCAGGACACACACAATGTTCGATCCGTATCTTTTCATCCCTCTGGGGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCAGCAAATACCCCAGAGGTTGGCCCTAATGGAGCCATAAACCAGGTCAGATATTCTTGTACGGGTGCTATGTATGTTACAGTATCTAAAGATGGTGCTATTCGATTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGGAGCACATGGAACAGCGGAGGCTACCAGTGCAATTTTTACAAAAGATGAAAGGTTTGTTCTCTCCTGTGGGAAGGATTCTGCCATAAAGCTTTGGGAAGTCAGCTCTGGAAGATTAGTCAAACAATATGTCGGAGCCATCCACACACAGATGAGATGCCAGGCTATATTTAATGAGACACAAGAATTTATTCTATTCATAGATGAATTGAGCAATGAGATCGTTATCTGGGACGCAATGACAACAGAAAAAGTAGCAAAATGGCCTTCTAATCATGTTGGTGCTCCCCGCTGGCTTGAACACTCACCAACAGAGTCTGCTTTTATTTCCTGTGGAACTGATAGGTCAATTCGGTTCTGGAAAGGAACTGTATAG 1296 0.4398 MDNSASEQTVQDGKHYRHLNSLIVAHLRDNNLTQAASAVATATMTPLNVEAPPNRLLDLLAKGLSAEKEDIRRGTSSSPFHNFATSLPLPHTKAVDFSSVPDMKGSSKSFPKHETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPDAKDGPVRPVIRTYYDHIQPINDLDFHPQGTILISGSKDQTIKFFDISKSSAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANTPEVGPNGAINQVRYSCTGAMYVTVSKDGAIRLWDGITANCVRSITGAHGTAEATSAIFTKDERFVLSCGKDSAIKLWEVSSGRLVKQYVGAIHTQMRCQAIFNETQEFILFIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPTESAFISCGTDRSIRFWKGTV* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0994 431 CDD WD40 114 428 - -
Apr1g0994 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Apr1g0994 431 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 6 429 IPR044633 GO:0005848|GO:0031124
Apr1g0994 431 SUPERFAMILY WD40 repeat-like 110 428 IPR036322 GO:0005515
Apr1g0994 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Apr1g0994 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 349 IPR001680 GO:0005515
Apr1g0994 431 Pfam WD domain, G-beta repeat 301 339 IPR001680 GO:0005515
Apr1g0994 431 Pfam WD domain, G-beta repeat 171 206 IPR001680 GO:0005515
Apr1g0994 431 Pfam WD domain, G-beta repeat 115 149 IPR001680 GO:0005515
Apr1g0994 431 Pfam WD domain, G-beta repeat 222 245 IPR001680 GO:0005515
Apr1g0994 431 SMART WD40_4 111 150 IPR001680 GO:0005515
Apr1g0994 431 SMART WD40_4 253 296 IPR001680 GO:0005515
Apr1g0994 431 SMART WD40_4 167 206 IPR001680 GO:0005515
Apr1g0994 431 SMART WD40_4 212 250 IPR001680 GO:0005515
Apr1g0994 431 SMART WD40_4 299 340 IPR001680 GO:0005515
Apr1g0994 431 SMART WD40_4 388 428 IPR001680 GO:0005515
Apr1g0994 431 Gene3D - 102 430 IPR015943 GO:0005515
Apr1g0994 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 208 - -
Apr1g0994 431 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Apr1g0994 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 159 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0994 123 427 Miscellaneous Gene Families AT5G08390 21.311 1.39e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0994 K14406 - gmx:100809908 786.949