Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0971 ATGTTGATTCAGATTCCTCGCCTCACCAACTCCCTGAGAGACACCTTCGATGTCGACCAGGCCTATCTTCATCGCAAAACCATTCTCCACAACCAAAGACCTCGCAATTCAGCAAGCTCGCTTGATGAATCGGAACTCGCGCGGAAGATCGTGTACGGGTGGGAGGAAGCTTCATCGGAAGTGCGGCAGGCCTACAAGCAATTTATAGGAGCAGTGGTGGACTTGGTTGATGGAGAAATGCGCTCTGAGGAGTTTCATGAGGTGGCACTGGCTGTATACCGTCTTTTTGGCAGGCTGGTTGCGGAGGAGGAGGAGGATTATACTGATAGAATTATTTCTGATAGAAAGTTAGAATTGGAAAAACTTACTGGTCATGCAATTGCTGATGCCAAGTTGAGGCAAGTTGCATCTCTAGCGCAGAGACTTTTAAATTTGCAGCCTAGCAGTAAAAACTCTACAATTTCTTTGCAAAGAAATCTAGATGCTGACGAGGATTTAGAATTTGGAGCTGATTTGGTTTTCCAAGCACCAGCTCGTTTCTTGGTTGATGTATCCTTAGATAATGAAGATATGATGGATTTCAAAAGCACAGCCTCTTTAGCATTTCACCAAGAACAGTATGATTATACAGTCCCAACAGATCAGGCTGTTGTTGAAGGGGAAAAGTTCAACTTGACTTGGTTAAGAGAAGCATGTGATAAAATAGTTAGGAATTGTAATTCACAGCTATCCCGAGATGAATTGGCAATGGCCATTTGTAGGGTTCTTAATTCAGAAAAGCTGGGCGAAGAGATAGCTGGAGATCTGTTGGATCTTGTTGGTGATAGTGCATTTGAAACTGTGCAAAATCTATTATTGCATCGAAAGGAGATTGTTGATTCTATTCATCATGGCTTATTGGTATTGAAGTCTGATAAAAATGCTTCAAATGCTCAGTCTCGTATGCCAAGTTATGGAACACAGGTGACTGTTCAAACAGAATCAGAAAAGCAAATTGACAAGCTTCGACGCAAGGAGGAAAAGCGAAATAGACGGGGAATAGAACATGCCGGTGATGATGACTTGTCTGCATTGGATTTCTTATCTTTACTTCAAGCAAGTGAGAGGAAAAAATTGTTTGATGAGATGATTGGTTCTGGGGATAGGTCCCAGTCAATAGCTGTTACTGCTCTTCCTGAAGGAACTGTAAGGAAGCATTTTAAGGGGTATGAAGAAGTTATCATTCCCCCAAAGCCAACTGCACCAATGAAACCTGGAGAAAAGCTGATTGAGATCAGGGAGTTAGATGACTTTGCTCAAGCTGCGTTCCGTGGTTACAAGTCACTAAATCGTATTCAGAGCAGGATATTTCCAACTGTTTACGGAACTAATGAGAATATTCTAGTGTGTGCTCCTACAGGAGCTGGCAAAACTAACATAGCTATGATTTCAATTCTACATGAGATTGGACAGCACTTCAGAGATGGTTACTTGCACAAAGATGAATTTAAGATAGTTTATGTTGCTCCAATGAAGGCTTTGGCTGCAGAGGTCACATCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTCAGAGAGCTTACTGGTGATATGCAGCTCTCTAAAAATGAACTTGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATTACTCGCAAGAGTAGTGACATGTCATTGTCGATGCTGGTGAAGCTCTTAATCATTGATGAGGTCCATCTACTTAATGATGATAGAGGTCCTGTAATAGAGGCTCTAGTCGCTAGAACCCTACGACAGGTGGAATCTACTCAGACAATGATACGCATTGTGGGGCTGTCTGCCACTCTTCCCAATTACCTAGAGGTTGCACAATTTCTCCGAGTAAATCCAGAAACAGGTCTTTTCTTCTTTGATTCTAGTTATCGTCCAGTGCCTCTTGCACAACAATATATTGGAATCAGTGAGCCAAACTTTGCAGCTCGTAATGAGTTGTTGAATGATATATGCTACACAAAGGTTGTTGATTCTATTAGGCAAGGGCATCAGGCAATGGTATTTGTCCATTCACGAAAAGACACTGTGAAGACAGCACAGAAGCTGGTTGAACTTGCACGAAGGAATGAGGACTTGGAACTGTTTTGTAATAATACACATCCGCAATATACCTTCATGAAGAAAGAAGTCATTAAATCAAGAAACAAAGATCTCGTTGAACTTTTTGAATCTGGCATGGGTGTACATCATGCTGGCATGTTACGTGCAGATAGAGGACTTACTGAGCGGCTTTTCTCTGATGGACTTCTGAAGGTTCTTGTCTGTACAGCAACTCTGGCATGGGGTGTCAATCTACCTGCACACACAGTTGTCATTAAGGGTACCCAATTATATGATCCAAAAGCTGGTGGGTGGCGAGACCTGGGTATGCTTGATGTTATGCAGATATTTGGGCGAGCTGGGAGACCTCAGTTTGACAAGAGTGGTGAAGGTATCATAATTACATCTCATGACAAACTAGCATATTATCTGCGACTGCTGACAAGTCAACTCCCCATAGAAAGCCAGTTTATTAGCTCCTTGAAAGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTTAAGGAAGCCTGTGCATGGCTTGGCTATACGTATCTTTTCATAAGAATGAGGATGAATCCTTTGGCATATGGTATTGGGTGGGATGAGGTGATGGCAGATCCAGCTTTGAGTTCTAAGCAAAGATCTCTTGTAATTGATGCTGCACGTGCACTTGATAAAGCAAAAATGATGCGGTTTGATGAGAAAAGTGGCAATTTTTACTGTACTGAGCTTGGTCGCATTGCAAGCCATTTTTACATTCAATATTCCAGTGTTGAAACATACAATGAGATGTTGAGACGCCACATGAATGACAGTGAGGTGATTAACATGATTGCGCATTCTTCTGAATTTGAGAATATTGCTGTTCGAGAAGAAGAACAGAATGAGCTAGAGATGTTGGCACGCACATCATGTCCATTAGAAATTAAGGGTGGTCCTTCCAACAAACATGGAAAAATTTCCATTCTGATTCAGTTGTACATATCTCGTGGTTCTATAGATTCTTTTTCGTTGGTATCTGATGCTGCGTACATATGTGCAAGCTTGGCTCGTATAATGCGGGCTTTATTTGAGATTTGCTTAAGAAGAGGCTGGTGCGAGATGTCTTTGTTCATGTTGGAATATTGCAAAGCTGTGGATCGCCAAGTTTGGCCACATCAACATCCTCTTAGACAATTTGACAAGGACCTTTCTGCAGATATATTGCGGAAGCTTGAAGAACGGGGGGCTGACCTAGATCGCCTGTTTGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGTTATGTGCCTGGAGGAAGGTTGGTCAAGCAATACCTAGGGTATTTTCCATCACTTCAGTTATCAGCAACTGTTAGTCCAATCACCAGAACTGTGTTAAAGGTTGATTTGGTTATCATGCCCATTTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCACATCTACCACTCAGAACTCTTTACCCTGACAAAGCGGATGGCTAGGGGAGAACCTTACAAGCTTTCCTTCACTGTGCCTATATTTGAACCACATCCACCACAATATTACATTCATGCCATTTCTGATTCCTGGCTTCATGCAGAGGCATTCTACACTATTACTTTTCATAATTTACCATTGCCAGAGGCTCGGACTGCTCACACTGAACTTCTTGATTTAAAACCTCTTCCTGTGTCTTCCCTTGGCAACAGTGCCTATGAAGCATTATATAGATTTTCACATTTTAATCCTATACAAACACAGACTTTTCATGTCTTGTATCATACGGACAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCGGAACTTGCTATGCTTCGACTCTTCAACACTCAGCCTGATATGAAGGTTATTTATATAGCACCTTTGAAAGCTATTGTTAGAGAAAGAATGAGTGATTGGCAAAAGCGACTTGTCTCTCAGCTAGGGAAAAAGATGGTTGAAATGACTGGAGACTATACTCCTGATTTGATGGCTCTCTTGTCAGCAAATATCATCATATCTACCCCTGAAAAATGGGATGGTATAAGTCGAAATTGGCATAGTCGTAGCTATGTCACAAAGGTTGGACTTGTGATATTGGATGAGATTCACTTATTAGGAGCTGATCGTGGGCCTATCCTTGAGGTTATTGTTTCTAGGATGAGATATATATCATCTCAAACAGAGCGTGCAGTACGGTTTATAGGCCTTTCTACAGCTCTAGCTAATGCTGGTGATCTAGCTGATTGGTTAGGCGTTGAGGAGATAGGACTCTTCAATTTCAAGCCAAGTGTGAGGCCCGTCCCTCTAGAAGTTCATATTCAGGGATATCCTGGAAAGTATTACTGCCCGAGGATGAACAGTATGAATAAACCAGCATATGCTGCAATATGCACACATTCACCTGCAAAACCAGTCCTTATATTTGTCTCATCACGACGCCAGACAAGACTTACTGCACTTGACCTAATTCAGTTTGCCGCATCAGATGAACATCCAAGGCAGTTCCTTGATTTGCCAGAAGAAGAACTGCAGATGGTTCTGTCTCAAGTCTCTGACCAAAACTTGCGGCATACTTTACAATTTGGCATTGGATTACACCATGCAGGCTTGAATGACAAAGACAGATCTCTGGTCGAGGAACTTTTTGCAAACAACAAGATTCAGATATTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTGATTATCAAGGGGACAGAATACTATGATGGAAAATCGAAAAGGTACGTTGATTTTCCAATCACTGATATTTTGCAAATGATGGGTCGTGCTGGCCGGCCTCAATTTGATCAACATGGGAAAGCTGTGATTCTTGTTCACGAACCCAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCCTTTCCTGTTGAGAGTAGTTTGAAGGTGCAGTTGCATGATCACATTAATGCTGAGATTATTTCTGGAACAATTGCCCATAAACAAGATGCGGTGCATTATCTTACATGGACTTACTTATTTCGCAGACTGATGGTCAATCCTGCATATTATGGACTGGAGAATGCAGAACCTGAATTTCTAAGTTCATATTTGTCTAGTCTAGTACAGAGCACATTTGAAGATTTGGAAGACAGTGGATGCATACAGATGAATGAAGACAAGGTGGAACCCATGATGTTGGGTTCAATTGCTTCTCAGTATTACCTCAGTTACATGACTGTATCGATGTTTGGTTCAAACATAGGACCGGATACATCACTTGAAGTCTTTTTGCATATTTTATCTGCTGCTTCTGAATTTGATGAACTTCCTGTGCGTCATAATGAGGAAAAATACAATGAAGCACTGTCTGAGAAAATTAAATATCCAGTGGATAAGAACCGTCTAGATGACCCCCATATCAAAGCAAATCTTCTATTTCAGGCTCATTTTTCTCAATTGGAGTTACCAATTAGTGACTATGTCACCGACTTGAAATCAGTACTAGATCAGAGTATACGCATTATTCAGGCCATGATTGATATATGTGCTAACAGTGGTTGGCTTTCAAGCTCAATTACTTGCATGCATCTTCTGCAAATGGTCATGCAGGGTTTGTGGTTGGACAAGGACTCATCCTTATGGATGTTGCCATGCATGAATGCTGATCTTATAAGTTCTCTTGGCAGAAGAGGAATTTCTAGTGTACAGGAATTATTTGACATTCCCAAGGCAGCACTGCAGACTGTAACTGCAAATTTCCCGGCTTCAAGATTGTATCAGGATCTACAGCATTTCCCTCACGTTAAAATGAAATTAAAGCTTCAGAGGAGGGACACTGATGGTGAGAGGTCCCACACATTATATATCAGATTAGAGAAGACCAATTCTAGACGACATTCTTCTAGAGCATTTGTACCTCGATTTCCTAAGATAAAAGAGGAACAATGGTGGTTGGTTCTTGGTAATACTGCTACGTCTGAGCTATATGCTTTGAAAAGAGTTTCATTTTCTGATCAGTTGGTTACTTCCATGAAGTTGCCTCAAACTCCAGCTAATCTTCAGGGCATGAAATTGATTTTGGTCTCCGACTGCTACGTTGGATTTGAACAAGAACACTCCATTGAAGAACTTCTATGTTAG 6270 0.4128 MLIQIPRLTNSLRDTFDVDQAYLHRKTILHNQRPRNSASSLDESELARKIVYGWEEASSEVRQAYKQFIGAVVDLVDGEMRSEEFHEVALAVYRLFGRLVAEEEEDYTDRIISDRKLELEKLTGHAIADAKLRQVASLAQRLLNLQPSSKNSTISLQRNLDADEDLEFGADLVFQAPARFLVDVSLDNEDMMDFKSTASLAFHQEQYDYTVPTDQAVVEGEKFNLTWLREACDKIVRNCNSQLSRDELAMAICRVLNSEKLGEEIAGDLLDLVGDSAFETVQNLLLHRKEIVDSIHHGLLVLKSDKNASNAQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRGIEHAGDDDLSALDFLSLLQASERKKLFDEMIGSGDRSQSIAVTALPEGTVRKHFKGYEEVIIPPKPTAPMKPGEKLIEIRELDDFAQAAFRGYKSLNRIQSRIFPTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPETGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNDICYTKVVDSIRQGHQAMVFVHSRKDTVKTAQKLVELARRNEDLELFCNNTHPQYTFMKKEVIKSRNKDLVELFESGMGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARTSCPLEIKGGPSNKHGKISILIQLYISRGSIDSFSLVSDAAYICASLARIMRALFEICLRRGWCEMSLFMLEYCKAVDRQVWPHQHPLRQFDKDLSADILRKLEERGADLDRLFEMEEKDIGALIRYVPGGRLVKQYLGYFPSLQLSATVSPITRTVLKVDLVIMPIFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAISDSWLHAEAFYTITFHNLPLPEARTAHTELLDLKPLPVSSLGNSAYEALYRFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLGKKMVEMTGDYTPDLMALLSANIIISTPEKWDGISRNWHSRSYVTKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLDLPEEELQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKSKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKVQLHDHINAEIISGTIAHKQDAVHYLTWTYLFRRLMVNPAYYGLENAEPEFLSSYLSSLVQSTFEDLEDSGCIQMNEDKVEPMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEEKYNEALSEKIKYPVDKNRLDDPHIKANLLFQAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWLDKDSSLWMLPCMNADLISSLGRRGISSVQELFDIPKAALQTVTANFPASRLYQDLQHFPHVKMKLKLQRRDTDGERSHTLYIRLEKTNSRRHSSRAFVPRFPKIKEEQWWLVLGNTATSELYALKRVSFSDQLVTSMKLPQTPANLQGMKLILVSDCYVGFEQEHSIEELLC* 2090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0971 2089 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 431 472 - -
Apr1g0971 2089 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 472 2085 - -
Apr1g0971 2089 PANTHER SEC63 DOMAIN-CONTAINING 431 472 - -
Apr1g0971 2089 PANTHER SEC63 DOMAIN-CONTAINING 472 2085 - -
Apr1g0971 2089 SMART AAA_5 456 637 IPR003593 -
Apr1g0971 2089 SMART AAA_5 1304 1475 IPR003593 -
Apr1g0971 2089 Pfam DEAD/DEAH box helicase 1292 1456 IPR011545 GO:0003676|GO:0005524
Apr1g0971 2089 Pfam DEAD/DEAH box helicase 444 617 IPR011545 GO:0003676|GO:0005524
Apr1g0971 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1176 1474 IPR027417 -
Apr1g0971 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 626 IPR027417 -
Apr1g0971 2089 SMART ultradead3 1286 1490 IPR014001 -
Apr1g0971 2089 SMART ultradead3 438 649 IPR014001 -
Apr1g0971 2089 Gene3D - 1255 1481 IPR027417 -
Apr1g0971 2089 MobiDBLite consensus disorder prediction 310 328 - -
Apr1g0971 2089 CDD SF2_C_Ski2 1481 1669 - -
Apr1g0971 2089 Gene3D - 943 1085 - -
Apr1g0971 2089 CDD DEXHc_ASCC3_2 1289 1477 - -
Apr1g0971 2089 SMART Sec63_2 1773 2086 IPR004179 -
Apr1g0971 2089 SMART Sec63_2 942 1250 IPR004179 -
Apr1g0971 2089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 668 866 IPR001650 -
Apr1g0971 2089 Gene3D - 851 941 IPR036388 -
Apr1g0971 2089 SUPERFAMILY "Winged helix" DNA-binding domain 1685 1785 IPR036390 -
Apr1g0971 2089 SMART helicmild6 1557 1657 IPR001650 -
Apr1g0971 2089 SMART helicmild6 733 821 IPR001650 -
Apr1g0971 2089 Pfam Sec63 Brl domain 942 1248 IPR004179 -
Apr1g0971 2089 Pfam Sec63 Brl domain 1773 2084 IPR004179 -
Apr1g0971 2089 Gene3D - 1482 1686 IPR027417 -
Apr1g0971 2089 Gene3D - 642 844 IPR027417 -
Apr1g0971 2089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 451 633 IPR014001 -
Apr1g0971 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 849 IPR027417 -
Apr1g0971 2089 Gene3D - 1087 1141 - -
Apr1g0971 2089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1528 1714 IPR001650 -
Apr1g0971 2089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1299 1474 IPR014001 -
Apr1g0971 2089 Gene3D - 1781 1917 - -
Apr1g0971 2089 PIRSF BRR2 10 2087 - -
Apr1g0971 2089 SUPERFAMILY Sec63 N-terminal domain-like 970 1145 - -
Apr1g0971 2089 Gene3D C2 domain 1144 1253 IPR035892 -
Apr1g0971 2089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1476 1685 IPR027417 -
Apr1g0971 2089 SUPERFAMILY Sec63 N-terminal domain-like 1806 1960 - -
Apr1g0971 2089 Gene3D - 430 641 IPR027417 -
Apr1g0971 2089 SUPERFAMILY E set domains 1994 2084 IPR014756 -
Apr1g0971 2089 MobiDBLite consensus disorder prediction 310 330 - -
Apr1g0971 2089 CDD DEXHc_ASCC3_1 441 637 - -
Apr1g0971 2089 SUPERFAMILY "Winged helix" DNA-binding domain 849 954 IPR036390 -
Apr1g0971 2089 CDD SF2_C_Ski2 641 832 - -
Apr1g0971 2089 Gene3D - 1687 1780 IPR036388 -
Apr1g0971 2089 Gene3D C2 domain 1976 2086 IPR035892 -
Apr1g0971 2089 Pfam Helicase conserved C-terminal domain 1570 1655 IPR001650 -
Apr1g0971 2089 Pfam Helicase conserved C-terminal domain 698 819 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0971 Apr-Chr1 14461813 14506596 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0971 K18663 - gmx:100811503 3903.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0971 1 14461813 14506596 Apr1g0971 1 14461813 14506596 ECH