Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0965 ATGGGGAGTGATGACAGTTTAAAGACATGGGTATCAGATAAGTTGATGTCACTGATGGGATATTCTCAGCCCACAGTTGTTCAGTACATGATTGGACTATCCAAGCAAGCTAGTTCACCTGATGATTTGGTGGGCAAACTAGTGGAGTTTGGTCTCTCCTCAAAGGACACCCGTGCATTTGCGGAAGAAATTTTCTCAAAAGTTCCTCATAAATCATCTGGTTTAAGTCAATATCAGAAACAAGAGAGAGAAGCTGCAATGTTGGCAAGGAAGCAGAAGACTTACACAATTTTGAAGACTGATGACAATAGTGATGATGACTATGTAGATAAGTCTACTGTTTCTGCATCTAGAAAGCTAGACAGTCATAAAAAACGTTTCAGGAGGAAAACTGAAGTTCAAGATGATGAAGATGATGAGGTAATTTCAAGAAAGGAAAGGGAGAGACAAGTTAAGAGAAGAACTTCCCCTGACATTGATAGTGATTCAGAGTCAGAAGAAGAAAGATTGAAAGATCAAAGAGAGAAGGAGGAATTAGAGCAACATTTGAGAGAAAGAGATGCAGCGGGTACACGGAAGTTGACTGAACCAAAATTAACACGAAAGGAGGAAGAAGAGGCAATTCGAAGGTCTAATGCCGAAGAGCTGGATGATATTAAAACTTTGAGAAAGGTTTCAAGGCAAGAATACTTGAAGAAAAGGGAGGAAAAAAAATTAGAAGAACTGAGAGATGATATAGAAGATGAGCAATATCTATTTGAAGGTGTGAAGCTTTCAGAAGCAGAATATCGTGAACTTAGGTACAAAAAGGAGATATATGAACTTGTGAAGAAGCGGTCAGAGGAGGCTGACAATGTGAATGAGTATAGAATGCCAGAAGCTTATGATCAGGAAGGTGGTGTTAATCAGGAAAAGAGATTTTCTGTCGCAATGCAGCGTTACAGGGATCCAAATGCTGAGGATAAGATGAATCCATTTGCTGAACAAGAGGCATGGGAGGAACATCAAATTGGAAAGGCAACACTGAAGTTTGGTTCAAAAAATAAAAAGCAAGCCTCTGATGATTATCAGTTTGTGTTTGAGGACCAAATTGATTTTATCAAGGCATCAGTGATGGATGGGGATAAGTTTGATTATGAAGAGATGGAAGATTCACTTGAAAAGTCCAGAGCGAAGTCAGCTTTAGAAGCACTTCAGGAGGAGAGGAAAAAGTTACCCATTTACCCTTATCGGGATGAATTGCTTCAAGCTGTTCGTGATCACCAGGTGCTTGTAATTGTTGGTGAAACTGGTTCAGGAAAGACTACACAGATTCCCCAATATCTCCATGAAGCTGGCTACACAAAGCATGGAATGATTGCATGTACTCAGCCACGGCGTGTTGCTGCTATGAGTGTTGCTGCTCGAGTTTCTCAAGAAATAGGGGTTAAACTTGGTCATGAGGTTGGTTACTCCATCCGTTTTGAAGATTGTACATCAGAGAAGACTATTCTGAAGTATATGACCGATGGAATGTTACTGAGGGAATTCCTTGGTGAGCCTGATCTAGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACGCTCTCAACTGATATCCTGTTTGGATTAGTAAAGGATATTGCTCGTTTCCGCCCTGATCTCAAGTTGCTGATATCAAGTGCAACACTTGATGCAGAGAAGTTCAGTGATTACTTTGATTCTGCGCCAATATTCAAAATTCCAGGGAGACGATATCCTGTTGAAATAAACTTTACCAAAGCACCAGAAGCTGACTACTTAGATGCTGCTATTGTCACGTCACTTCAAATCCATGTCACTCAACCTCCTGGAGATATATTGGTATTCCTTACCGGTCAAGAAGAAATTGAAACAGCTGAAGAAATCTTGAAGCATCGAACTAGAGGCTTGGGGACTAAAATTGCTGAGTTAATAATATGCCCCATATATGCCAACCTACCAACTGAATTACAAGCTAAAATATTTGAACCCACTCCTGAAGGGGCACGAAAGGTTGTGCTTGCTACTAATATTGCAGAAACATCATTGACAATTGATGGCATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCCTTGCTAGTAACTCCCATCTCAAAAGCTTCAGCAATGCAAAGAGCTGGTCGTTCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGATTGTATACTGCATACAATTTTCACCATGACTTGGATGATAACACTGTACCAGAAATACAGCGTACTAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGACTTACTGCACTTTGATTTTATGGATCCTCCACCTGCTGAGGCCTTATTGAAAGCCCTGGAGCTTCTGTATGCATTAAGTGCATTAAATAAGCTCGGTGAGTTAACTAAGGGAGGTAGACGGATGGCGGAGTTCCCACTTGATCCTATGTTGTCAAAAATGATAGTGGCGTCAGAAAAGTACACGTGTTCAGATGAGATAATTTCTATTGCTGCTATGCTTTCTGTTGGCAACTCAATATTTTACCGTCCAAAGGATAAACAAGTACATGCAGACAATGCAAGGATGAATTTTCACACTGGAAATGTTGGAGACCATATTGCATTGCTGAAGGTTTACAATTCATGGAAGGAGACCAACTATTCAACACAATGGTGTTATGAAAATTATATACAGGTAAGGAGTATGAAACGGGCTAGGGATATTCGAGATCAACTTGCAGGTCTTTTAGAGAGGGTTGAGATTGAACTAACTTCGAATGCTGATTTAGATGCCATCAAGAAATCCATAACATCTGGGTTTTTCCCACACTCTGCACGACTGCAAAAGAATGGATCATATAGGACTGTTAAACATCCACAGACTGTTCACATACATCCTAGTTCAGGGCTGGCACAGGTTCTTCCAAGATGGGTTATATACCATGAACTAGTACTCACAACCAAGGAATATATGAGACAGGTGACGGAATTAAAGCCAGACTGGTTGGTGGAGATAGCCCCCCACTATTACCAGCTTAAGGATGTTGAAGACTCGTCTTTCAAGAAAATGCCTCGTGGAGAAGGACGTACATAG 3129 0.4056 MGSDDSLKTWVSDKLMSLMGYSQPTVVQYMIGLSKQASSPDDLVGKLVEFGLSSKDTRAFAEEIFSKVPHKSSGLSQYQKQEREAAMLARKQKTYTILKTDDNSDDDYVDKSTVSASRKLDSHKKRFRRKTEVQDDEDDEVISRKERERQVKRRTSPDIDSDSESEEERLKDQREKEELEQHLRERDAAGTRKLTEPKLTRKEEEEAIRRSNAEELDDIKTLRKVSRQEYLKKREEKKLEELRDDIEDEQYLFEGVKLSEAEYRELRYKKEIYELVKKRSEEADNVNEYRMPEAYDQEGGVNQEKRFSVAMQRYRDPNAEDKMNPFAEQEAWEEHQIGKATLKFGSKNKKQASDDYQFVFEDQIDFIKASVMDGDKFDYEEMEDSLEKSRAKSALEALQEERKKLPIYPYRDELLQAVRDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPRRVAAMSVAARVSQEIGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNFHHDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLHFDFMDPPPAEALLKALELLYALSALNKLGELTKGGRRMAEFPLDPMLSKMIVASEKYTCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNADLDAIKKSITSGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELKPDWLVEIAPHYYQLKDVEDSSFKKMPRGEGRT* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0965 1042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 415 578 IPR014001 -
Apr1g0965 1042 Coils Coil 914 934 - -
Apr1g0965 1042 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 520 529 IPR002464 -
Apr1g0965 1042 Coils Coil 225 252 - -
Apr1g0965 1042 PANTHER ATP-DEPENDENT RNA HELICASE 103 1039 - -
Apr1g0965 1042 Pfam Helicase associated domain (HA2) 797 871 IPR007502 GO:0004386
Apr1g0965 1042 MobiDBLite consensus disorder prediction 127 219 - -
Apr1g0965 1042 SMART ultradead3 403 587 IPR014001 -
Apr1g0965 1042 PANTHER OS05G0389800 PROTEIN 103 1039 - -
Apr1g0965 1042 SMART helicmild6 627 735 IPR001650 -
Apr1g0965 1042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 601 776 IPR001650 -
Apr1g0965 1042 CDD SF2_C_RHA 582 743 - -
Apr1g0965 1042 MobiDBLite consensus disorder prediction 119 219 - -
Apr1g0965 1042 Gene3D - 581 756 IPR027417 -
Apr1g0965 1042 SMART ha2_5 796 888 IPR007502 GO:0004386
Apr1g0965 1042 Gene3D - 364 580 IPR027417 -
Apr1g0965 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 929 IPR027417 -
Apr1g0965 1042 Pfam Helicase conserved C-terminal domain 608 735 IPR001650 -
Apr1g0965 1042 Gene3D - 780 939 - -
Apr1g0965 1042 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 944 1021 IPR011709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0965 Apr-Chr1 14269832 14291743 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0965 K12813 - gmx:100809559 1853.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0965 1 14269832 14291743 Apr1g0965 1 14269832 14291743 ECH