Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0960 ATGTTTGCTTCAAAGAAATCCCCTTTGAGAGATGCTAAACCTAGCTCTGTTGACCCTGTCTATAACCCCTTTGATACTGATGAAGACACAAAACATAAAAAGTATAATTCCTCTAAGAAGACTTTAACCAACACCAACCCCTTTGATGATGTTGTTGATGCCAGTGCCCACTCTTCATCATCTTCATATGCCCTTTCATCCGCCAATCGAAGCAGGTATAAAAATGATTTCCACGACTCTGGGGGATTGGAGAGCCAATCACTGGAGGAATTGGAGAATTATGCTGTTTACAAGGCTGAAGATACTACAAAGTCAGTGAACAATTGTTTGAAAATAGCAGAGGAAATGAGAGAGGATGCTACTAAGACTTTGGTGATGCTGCACCAACAGGGCGAGCAGATTACAAGGAGTCACCATGTTGCTGTTGATATTGACCATGATTTAAGTCGGGGTGAAAAGCTATTGGGAAGTCTTGGTGGCATGTTCTCCAAAACTTGGAAGCCAAAGAAGACAGGCACAATAAATGGCCCTGTTATTTTTGGAGACGATCCGGTGAGAAGGAAGGGCAACCACTTGGAGCAAAGAGAGAAGTTAGGATTGACTTCTGCCCCTAAAGGGCAGTCAAAGTCACGTACAACACTTCATGATCCAACAAATACACTTGAAAAAGTTGAGGTTGAAAAAGGTAAGCAAGATGATGCACTGTCGGATTTAAGTGATCTCTTGGGAGAACTGAAAGACATGGCCACTGACATGGGATCTGAAATTGAGAGGCAAAACAAAGCCTTGGGCGGTTTTGATGAAGATATGGAGAAGTTGAACATTCGCATGAATGGTGCTAATCAACGTGGTCGTCGTTTACTTGGAAAATAG 873 0.425 MFASKKSPLRDAKPSSVDPVYNPFDTDEDTKHKKYNSSKKTLTNTNPFDDVVDASAHSSSSSYALSSANRSRYKNDFHDSGGLESQSLEELENYAVYKAEDTTKSVNNCLKIAEEMREDATKTLVMLHQQGEQITRSHHVAVDIDHDLSRGEKLLGSLGGMFSKTWKPKKTGTINGPVIFGDDPVRRKGNHLEQREKLGLTSAPKGQSKSRTTLHDPTNTLEKVEVEKGKQDDALSDLSDLLGELKDMATDMGSEIERQNKALGGFDEDMEKLNIRMNGANQRGRRLLGK* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0960 290 Gene3D - 222 289 - -
Apr1g0960 290 CDD SNARE_SNAP25N_23N_29N_SEC9N 93 157 IPR044766 GO:0005484|GO:0031201
Apr1g0960 290 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Apr1g0960 290 MobiDBLite consensus disorder prediction 193 216 - -
Apr1g0960 290 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 290 - -
Apr1g0960 290 SUPERFAMILY SNARE fusion complex 86 156 - -
Apr1g0960 290 Gene3D - 82 160 - -
Apr1g0960 290 MobiDBLite consensus disorder prediction 39 68 - -
Apr1g0960 290 MobiDBLite consensus disorder prediction 1 68 - -
Apr1g0960 290 CDD SNARE_Qc 230 286 - -
Apr1g0960 290 SUPERFAMILY SNARE fusion complex 225 288 - -
Apr1g0960 290 MobiDBLite consensus disorder prediction 201 215 - -
Apr1g0960 290 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 290 - -
Apr1g0960 290 SMART tSNARE_6 220 287 IPR000727 -
Apr1g0960 290 SMART tSNARE_6 91 158 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0960 Apr-Chr1 14179064 14181592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0960 K18211 - gmx:100794076 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0960 1 14179064 14181592 Apr1g0960 1 14179064 14181592 ECH