Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0943 ATGTTTAAGCTTGTTCGTCGGAGAAGCATCCCCATCACTGTCACTCTCAACAACCCTTTATCACTCTCCACATCCACCCCTTCTTCCCATACTAACGCCATCATCCACATCCTCACATCTTCCAACACCTTCGCACAAGCCACCTCTCTCACCAAACAATGCCTCCAAAACTCACGCACTACCTGTTCTTCCCTCTTCCACGCTCTCACACGCGCCCAACTCACGCCCCGCGCGTTTGGGGTTCTCATACTCGCGTTCTCCCAACTTGGTCTCGCCGAGGAAGCCCTGTGGTTCTACAAAAACTTAGTTTCTTTGCCTCCGTTACAGCCTTGCAATGCGCTTCTTCATGCGTTGGTCAAAACGCGGAGGTTTGATTCCGTGTGGCAGGTGTATGGTGACATGGTGTCGCGCGGGTTTTCCCCCACCGCTATCACCTATGGCATTTTGATGCACTGTTCGTGCAACCAAGGTGATGTTAGCAACGCACGCAAGATGTTCGATGAAATGTTTAAGAGGGGTATTGAACCCACGGTTGTGGTTTACACTATTCTGATTCGTGGCTTTTGCAATGAGGGTCAAATGGAAGAAGCAGAGCGTGTGTTTGGACTAATGAGGGAATCTAGAGTGGTGGCACCCAATCTGTACACTTATAAGACCCTCATGGATGGGTATTGCAAGATGGGTGATGTTAAACGAGTTTTTTATTTGTATTGCGATTTGCTAAAGCATGGCTTGCACCCTGATGTTGTGATTTTTGCTACTTTGATAGATGTTCTTTGCAAGATGGGAGATTTGACGGCTGCGAGAAACTGTTTTGCTTACATGGCTAAGTTTGGTGTTGCTCCTAATATATATGCTTATAATTCTTTGATTGATGGATACTGTAAGGTGGGGAACTTGCCTGAAGCAATGCATTTGCAAGTAGAAATGGAAAGGTGTGAAATCTTATCAGATGTTTTCACGTACAATATACTCATTAAGGGTCTATGTGATGAAGATAGAGTGGAAGAAGCTGAGGATTTAATGGAGAAAATGGACAATGTTGGGATCCTTGCCAATTCTGTGACATACAATGTGATGATTGATGGATTCTGTAAAAGTGGGGATATGGATAAGGCTATTGAGGTGTGTTCTCGAATGACTGAACGGAAAATTGAACCTGATGTTATCACCTTTTCTACATTAATTGACGGGTTTTGCAAGAAAGGGAACACCAAAGCTGCGATGGGCTTGTATACAGAAATGGTAATCAAAGGTCTTGTGCCTGATGTGGTAACTTACACTGCTCTGATTGATGGGCACTGCAAAGTTGGGAAAATCAAAGAGGCTTTCAGGTTGCACAAGGAGATGCTGGATGCTGGACTAACACCAAATGTGTTTACAGTTAGTTGTTTAATTGATGGTCTTTTGAAAGATGGAAGGAAATATGATGCAATCAAACTGTTTTTGGAGAAAACTGGAGCTGGTTGGTCTGGAGGTAAAGTTAACAACAGCAGCTTTTGTTCTCCAAACAGCGTGATGTTTGCCATTTTAATTCAAGGTTTATGTAAAGATGGACAGATCTTCAAGGCCACTAAGTTTTTTGCAGAAATGAGGAGCAATGGTTTCAAACCAGACATGCTAGTTTATGTTACCATGTTGCAGGCACATTTTCAATCCAAGCATATACTTGATGGAATGATGCTGCATGCAGAAATGCTGAAGATGGGTGTTGTGCGAAATACTTCCATAAATGGGGTATTGTCCAGGGGCTATCGAGTGAATGGGTATTCGAAATCAGCTCATATGTGTTCTGAGTATTTAATGGAATATGACATTCGGTTTCCCGACCCTGCAGGGTGA 1842 0.4354 MFKLVRRRSIPITVTLNNPLSLSTSTPSSHTNAIIHILTSSNTFAQATSLTKQCLQNSRTTCSSLFHALTRAQLTPRAFGVLILAFSQLGLAEEALWFYKNLVSLPPLQPCNALLHALVKTRRFDSVWQVYGDMVSRGFSPTAITYGILMHCSCNQGDVSNARKMFDEMFKRGIEPTVVVYTILIRGFCNEGQMEEAERVFGLMRESRVVAPNLYTYKTLMDGYCKMGDVKRVFYLYCDLLKHGLHPDVVIFATLIDVLCKMGDLTAARNCFAYMAKFGVAPNIYAYNSLIDGYCKVGNLPEAMHLQVEMERCEILSDVFTYNILIKGLCDEDRVEEAEDLMEKMDNVGILANSVTYNVMIDGFCKSGDMDKAIEVCSRMTERKIEPDVITFSTLIDGFCKKGNTKAAMGLYTEMVIKGLVPDVVTYTALIDGHCKVGKIKEAFRLHKEMLDAGLTPNVFTVSCLIDGLLKDGRKYDAIKLFLEKTGAGWSGGKVNNSSFCSPNSVMFAILIQGLCKDGQIFKATKFFAEMRSNGFKPDMLVYVTMLQAHFQSKHILDGMMLHAEMLKMGVVRNTSINGVLSRGYRVNGYSKSAHMCSEYLMEYDIRFPDPAG* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0943 613 Gene3D Tetratricopeptide repeat domain 494 607 IPR011990 GO:0005515
Apr1g0943 613 Pfam PPR repeat family 176 226 IPR002885 -
Apr1g0943 613 Pfam PPR repeat family 111 155 IPR002885 -
Apr1g0943 613 Pfam PPR repeat family 282 331 IPR002885 -
Apr1g0943 613 Pfam PPR repeat family 503 549 IPR002885 -
Apr1g0943 613 Pfam PPR repeat family 353 401 IPR002885 -
Apr1g0943 613 Pfam PPR repeat family 422 471 IPR002885 -
Apr1g0943 613 Gene3D Tetratricopeptide repeat domain 416 489 IPR011990 GO:0005515
Apr1g0943 613 Gene3D Tetratricopeptide repeat domain 171 240 IPR011990 GO:0005515
Apr1g0943 613 Gene3D Tetratricopeptide repeat domain 241 313 IPR011990 GO:0005515
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Apr1g0943 613 Gene3D Tetratricopeptide repeat domain 21 170 IPR011990 GO:0005515
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Apr1g0943 613 Pfam PPR repeat 79 103 IPR002885 -
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Apr1g0943 613 PANTHER ATPASE EXPRESSION PROTEIN 3 30 590 - -
Apr1g0943 613 PANTHER OSJNBA0060P14.6 PROTEIN 30 590 - -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 355 389 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 144 178 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 215 249 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 506 539 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 250 284 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 111 142 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 425 459 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 179 213 IPR002885 -
Apr1g0943 613 TIGRFAM PPR: pentatricopeptide repeat domain 390 424 IPR002885 -
Apr1g0943 613 Gene3D Tetratricopeptide repeat domain 314 409 IPR011990 GO:0005515
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Apr1g0943 613 SUPERFAMILY HCP-like 155 385 - -
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Apr1g0943 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Apr1g0943 613 Pfam PPR repeat 244 275 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0943 317 596 Glycosyltransferase AT1G05670 28.114 2.00e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0943 - - lja:Lj1g3v0525420.1 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0943 1 13529238 13531401 Apr1g0943 1 13529238 13531401 ECH