Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0942 ATGCAGGAGATACTGAGAAACCTTGTCAGCATGGGAATGGTTCTTGATAGGCATCAAAGTATCAAAGGAGCTGTCTCAAATCCACACATTGGGTGGCAACCTCCAAATGCATATCATGTATACTGCATTCGTCATATTGCCAGCAACTTTAATCACCGATTTAAAAATATCGCCTTGAAGAAAGACCTCATAAAATTAGAAGCTGTGAATAAGGTGTTTAAAGGTGCTAGAAATATACCCATAACTACACTGGTTAAAGCCACATACGGACGTTTAGTTGAATATTTTGTAAAGCGTGGAGAAGAAGCCATATCTGACCTTCACAATGGAAACATGTTTTGTCGTATAGTAATGTTGCAAATACAAAAAAAATCAACAAGAGGCTTCATCACACCAGTTTATTCAATAGAATATGTTGTCAATGCATACTCTCCACAGTGGCGCCCCCTTGGTAATGAATGCAACATCCATACAAACAGTGAATGGAAGTTGGTGCCTGACATTGAAAGAGCTAGAGCTAAGGGACGACCTAAGTCAACTCGTATTAGGAATGAAATGGACTGGGTTGAATCACAAACTAGACAAAGGTGTTCACGTTGTAACGAAGGAACTGTGATGGTATGGGGAAAATACCATCAGGGCGTTCTGCCATGGCTGGAACGGACCACTCTGCTGCGTACACTTGTCGTCGTCGACGTCCCAAACCCTTTCCTTCTCTTCGTTGTTGTGGATGATCTACGTGTAAGTCTGGATGTTGTGGATTGCCACTCTGCACTGGAGGATTTGAACATGAAACATGTTCTAATATGCGATCATGCTTCTTTTTTAGTGATAGGAGAGTCTCAGACAAGTCCTTCAACTCTTCAAAGGAGTCAGAACAAGTTGTTTCATGGCTCCATGTCCACATGGCATCACAAAGCTGATTTCCACATTAACCTCAAACCACCAAAGCCAAACCAGACCCTTAAGAAGCACCTTGAGTGCAATAGCCACACCAAAGTGCTGTTACTCTTCAGATTCTTCTTAAGAAAAAGACCCACTTTCAACTCCACTGATAGCTATTCTCTACTCTATGCCCTCCAAGCCTGCAAACAGAAACATTCCTCCATCCAAGGAAAACAATTGCATGCCCTCATCATAAAACTTGGCCACCAAACCATTGTTCAACTTCAGACATCTCTTTTGAAAGTGTATGCCGAACAAGGCAACCTTAGTAATGCACACCAAGTTTTTGATGAAATACCATTCAAGAACATCATATGCTGGACATCTTTGATTTCTGCCTATGTTGACCATCACAAGCACAACCAGGCTTTGCAACTGTTTAGGTTGATGCTGATGAACAATGTGGAACCTGATCAGGTCACTGTGACTGTTGCTCTCTCTGCCTGTGCTGAGACTGGGGCACTTGAAATGGGTGAATGGATCCATGCTTTTGTGCAGCATAAACAAGGGCTGAACAGAGATTTGTGTTTGAATAATGCTCTTATAAATATGTATGCTAAATGTGGGGATATTGCAACTGCCAGGAAGTTGTTTGATAGCATGAGAAACAAAGATGTCACGACTTGGACTTCCATGATTGTGGGGCACGGGCTGCATGGGCAAGCACATGAGGCTCTTCAACTTTTCTCAGAAATGAAGGACAGGGAAAATTGGAGTTCCTACGGTAATGTCATAACTCCAAATGATGTAACTTTCTTAGGAGTCTTAATGGCTTGCAGTCATGCAGGTCTAGTTGAGGAAGGGAAGCGCCATTTCAGAAGTATGAGTGAAGATTATGGTATAGAGCCAAGAGAGCCTCACTTTGGGTGCATGGTGGATCTTTTATGCAGAGGTGGGCATCTGAGAGATGCCTATGACTTCATTATAGAGATGCCAGTGCCGCCAAATGCAGTAGTCTGGCGAAACTTGCTGGGAGCATGCTGCCTCCATGGCGAATTAGAGCTAGCAGTGGAAGTTTGGCATAAGCTGCTCAAGTTGGATCCTAACTATGTGGGTGATAGTGTTTCTATGTCTAATATTTATGCAAATAAAGGCTTGTGGAATAAGAAGGTGATTGTTAGGAATCAGATAAAACAGTCAAGGGCTCCTGGCTGCAGCTCAATTGAGGTTGAAAGTGGGGTTAGTGAATTTGTGACTGCAGATGATGATCATCCTTTCGTGACAGATAAGTGA 2178 0.427 MQEILRNLVSMGMVLDRHQSIKGAVSNPHIGWQPPNAYHVYCIRHIASNFNHRFKNIALKKDLIKLEAVNKVFKGARNIPITTLVKATYGRLVEYFVKRGEEAISDLHNGNMFCRIVMLQIQKKSTRGFITPVYSIEYVVNAYSPQWRPLGNECNIHTNSEWKLVPDIERARAKGRPKSTRIRNEMDWVESQTRQRCSRCNEGTVMVWGKYHQGVLPWLERTTLLRTLVVVDVPNPFLLFVVVDDLRVSLDVVDCHSALEDLNMKHVLICDHASFLVIGESQTSPSTLQRSQNKLFHGSMSTWHHKADFHINLKPPKPNQTLKKHLECNSHTKVLLLFRFFLRKRPTFNSTDSYSLLYALQACKQKHSSIQGKQLHALIIKLGHQTIVQLQTSLLKVYAEQGNLSNAHQVFDEIPFKNIICWTSLISAYVDHHKHNQALQLFRLMLMNNVEPDQVTVTVALSACAETGALEMGEWIHAFVQHKQGLNRDLCLNNALINMYAKCGDIATARKLFDSMRNKDVTTWTSMIVGHGLHGQAHEALQLFSEMKDRENWSSYGNVITPNDVTFLGVLMACSHAGLVEEGKRHFRSMSEDYGIEPREPHFGCMVDLLCRGGHLRDAYDFIIEMPVPPNAVVWRNLLGACCLHGELELAVEVWHKLLKLDPNYVGDSVSMSNIYANKGLWNKKVIVRNQIKQSRAPGCSSIEVESGVSEFVTADDDHPFVTDK* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0942 725 SUPERFAMILY TPR-like 397 684 IPR011990 GO:0005515
Apr1g0942 725 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 255 716 - -
Apr1g0942 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 550 IPR002885 -
Apr1g0942 725 Pfam PPR repeat family 417 465 IPR002885 -
Apr1g0942 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 519 IPR002885 -
Apr1g0942 725 Pfam E motif 645 704 IPR046848 -
Apr1g0942 725 Gene3D Tetratricopeptide repeat domain 558 708 IPR011990 GO:0005515
Apr1g0942 725 Gene3D Tetratricopeptide repeat domain 481 557 IPR011990 GO:0005515
Apr1g0942 725 Gene3D Tetratricopeptide repeat domain 317 480 IPR011990 GO:0005515
Apr1g0942 725 Pfam PPR repeat 565 592 IPR002885 -
Apr1g0942 725 Pfam PPR repeat 494 520 IPR002885 -
Apr1g0942 725 Pfam PPR repeat 523 550 IPR002885 -
Apr1g0942 725 Pfam PPR repeat 392 415 IPR002885 -
Apr1g0942 725 Pfam PPR repeat 603 626 IPR002885 -
Apr1g0942 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Apr1g0942 725 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 255 716 - -
Apr1g0942 725 TIGRFAM PPR: pentatricopeptide repeat domain 523 550 IPR002885 -
Apr1g0942 725 TIGRFAM PPR: pentatricopeptide repeat domain 494 521 IPR002885 -
Apr1g0942 725 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0942 Apr-Chr1 13518014 13526606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0942 328 720 Glycoside Hydrolase AT3G49170 34.596 1.06e-71 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0942 - - aprc:113851938 1468.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0942 1 13518014 13526606 Apr1g0942 1 13518014 13526606 ECH