Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0890 ATGGCCACTAGTAAAAGATGGGTTGGAACAAAACCGTTAACAAGTTTATCACCAGCACCAATGGTTGAACATATGGTACCTAATTCTGGATGGATTGAGGACACCGTAAGGCACTGTCTTCTTATAGATCTTCCAGAGTTCAAGAAGGAAGACGTGAAGCTTCAGGTTGATGGCTCCGCTGGCCGTATAAAGGTACGAGGAGAAAGGCAATTAAATGAACAAAAGCGTGTTCAGTTCGAGGAAACCTTTGCAGTGCCAACAGATTCAGATGTGGACAAGATAACCGGAAAGTTTGATAACCAAATCCTTTACGTGGATGTCCCAAAGCGAATTTCACAAGGAAATCACATAGAGAAAGCTTCAAATGGGAATGCTGATAATGAGATGAGGCCTCGTGGTCAACACGACAGGGATAGAGAGAATGGAGGAACAGAAAATGAAAATGCACAGTACATAGGGCGTTTATGCAATGAATTAACAAGGAACTGGGACCAAGAATATTATTCTGACGCGTCAAACACTGCAATGGACATTTTGAGGAGAAACAGGGGAGTTGTTATGACGGCTGCTTTAGCATTTTCCTTAGGAATTTATATGTCTCAAATGTTCCATATATGA 618 0.4175 MATSKRWVGTKPLTSLSPAPMVEHMVPNSGWIEDTVRHCLLIDLPEFKKEDVKLQVDGSAGRIKVRGERQLNEQKRVQFEETFAVPTDSDVDKITGKFDNQILYVDVPKRISQGNHIEKASNGNADNEMRPRGQHDRDRENGGTENENAQYIGRLCNELTRNWDQEYYSDASNTAMDILRRNRGVVMTAALAFSLGIYMSQMFHI* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0890 205 PANTHER HEAT SHOCK PROTEIN 26 15 137 IPR045045 -
Apr1g0890 205 PANTHER INACTIVE PROTEIN RESTRICTED TEV MOVEMENT 2-LIKE 15 137 - -
Apr1g0890 205 CDD ACD_sHsps-like 31 109 - -
Apr1g0890 205 Gene3D - 11 114 IPR008978 -
Apr1g0890 205 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 20 126 IPR002068 -
Apr1g0890 205 SUPERFAMILY HSP20-like chaperones 22 110 IPR008978 -
Apr1g0890 205 MobiDBLite consensus disorder prediction 114 148 - -
Apr1g0890 205 Pfam Hsp20/alpha crystallin family 33 113 IPR002068 -
Apr1g0890 205 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0890 Apr-Chr1 11966908 11968841 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0890 - - aprc:113851632 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0890 1 11966908 11968841 Apr1g0890 1 11966908 11968841 ECH