Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0888 ATGGGGAATCTTTTCTGTTGTGTGCAAGTTGACCAATCCACAGTGGCTATCAAAGAAAGATTTGGACGGTTTGAAGAAGTGCTTCAGCCAGGATGCCATTGCATGCCATGGATCCTTGGAAATCAACTTGCTGGTCATCTCTCTCTTCGTATACAGCAACTGGATGTTCGTTGTGAGACTAAAACAAAGGATAATGTCTTTGTCAACGTTGTTGCTTCAGTTCAATATCGTGCCCTGTCAGAGAAGGCTAATGATGCTTTTTACAAACTAAGTAATACAAAGAGCCAAATCCAAGCCTATGTTTTTGATGTAATTAGAGCAAGTGTTCCAAAACTCAACTTGGATGACGCTTTTGAGCAGAAAAATGACATCGCTAAAGCCGTGGAGGATGAGCTTGAGAAGGCTATGTCAGCTTATGGGTATGAAATTGTTCAAACTCTGATTGTTGACATTGAGCCAGATGAGAATGTGAAGCGGGCTATGAATGAAATCAACGCTGCTGCAAGATTGAGGGTGGCAGCTAATGAGAAGGCAGAGGCAGAGAAGATCTTGCAAATAAAGAGAGCCGAGGGTGAGGCCGAGTCTAAGTATCTCTCAGGGTTGGGTATTGCTCGCCAACGTCAAGCAATTGTGGATGGTTTGAGGGATAGTGTGCTGGGATTCTCAGTTAATGTACCTGGTACAACTGCTAAAGATGTTCTTGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGAAATTGGTGCTGCCTCCAAGTCTTCTGCTGTTTTCATTCCTCATGGACCTGGTTCTGTTCGTGATATAGCTACCCAAATTCGTGATGGACTTTTTCCGGGTTCTCATGAGTAG 855 0.4339 MGNLFCCVQVDQSTVAIKERFGRFEEVLQPGCHCMPWILGNQLAGHLSLRIQQLDVRCETKTKDNVFVNVVASVQYRALSEKANDAFYKLSNTKSQIQAYVFDVIRASVPKLNLDDAFEQKNDIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVLDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGSVRDIATQIRDGLFPGSHE* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0888 284 SMART PHB_4 5 165 IPR001107 -
Apr1g0888 284 Pfam SPFH domain / Band 7 family 9 182 IPR001107 -
Apr1g0888 284 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1-LIKE 1 283 - -
Apr1g0888 284 SUPERFAMILY Band 7/SPFH domain 46 171 IPR036013 -
Apr1g0888 284 Gene3D Band 7 domain 42 167 IPR036013 -
Apr1g0888 284 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 283 - -
Apr1g0888 284 Coils Coil 157 190 - -
Apr1g0888 284 CDD SPFH_like_u4 10 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0888 Apr-Chr1 11951845 11954472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0888 - - csin:114272265 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0888 1 11951845 11954472 Apr9g3031 9 37115371 37119177 ECH
Apr1g0888 1 11951845 11954472 Apr1g0888 1 11951845 11954472 ECH