Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0886 ATGGCTGAGGCAGATAACTCCATCACCAGTGGTCACAAGTTAGCCGGCAGAGTTGCCATAATCACCGGCGGCGCTAGCGGCATCGGGGAAGAGACGGCGCGTCTGTTCGCCAGCGAGGGTGCGCGTATGGTAGTTATCGCAGACATTCAAGATGACCTCGGCAACCAAATCGCAGCTTCCATTGGCTCTCACAGGTGCAGCTATGTCCATTGCGACGTGACAGACGAAGACCAAGTCAAACATCTTGTGGATTCGACGGTCAACCTTCACGATCAGTTAGACATCATGTTCAGCAACGCCGGCATCCTCAGTCCTTCTGACCAGAACATCCTGGACCTCAACTTCACGGAGTTCGACCGCCTATTCGCCGTTAACACGCGGGGCATGGCGGCGTGCGTGAAGCACGCGGCGCGTTCGATGGTGGAGCGGCGCGTGAAGGGTAGCATCGTGTGCACGGGGAGTGTGGCGGCGTCGCACGGTGGTTTTAAACGCACGGACTACGTGATGTCGAAGCACGCGGTGAAGGGTTTGGTGCGGAGCGCGAGTGCGCAGCTTGGGGTGCACGGGATTAGGGTGAACTGCGTCTCACCGAGTGGGTTGGCCACACCGTTGACACGTGCTGCGCACGCGACGATGGAGACCCAAGAGTTGCAAAAGCAGTATGCACAAAACGCAAGGCTGAAAGGCATCGTTTTGACCCCGAAACATGTCGCAGATGCGGTGCTGTTTCTTGCGTCTCGTGATTCTGAGTTCGTTAACGGACACGATCTTGCGGTGGACGGGGGTTTCGACCGTGCCTGA 801 0.5768 MAEADNSITSGHKLAGRVAIITGGASGIGEETARLFASEGARMVVIADIQDDLGNQIAASIGSHRCSYVHCDVTDEDQVKHLVDSTVNLHDQLDIMFSNAGILSPSDQNILDLNFTEFDRLFAVNTRGMAACVKHAARSMVERRVKGSIVCTGSVAASHGGFKRTDYVMSKHAVKGLVRSASAQLGVHGIRVNCVSPSGLATPLTRAAHATMETQELQKQYAQNARLKGIVLTPKHVADAVLFLASRDSEFVNGHDLAVDGGFDRA* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0886 266 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 12 263 - -
Apr1g0886 266 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Apr1g0886 266 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Apr1g0886 266 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Apr1g0886 266 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Apr1g0886 266 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Apr1g0886 266 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
Apr1g0886 266 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Apr1g0886 266 Gene3D - 2 264 - -
Apr1g0886 266 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 198 - -
Apr1g0886 266 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 12 263 - -
Apr1g0886 266 Pfam Enoyl-(Acyl carrier protein) reductase 23 263 - -
Apr1g0886 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 263 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0886 Apr-Chr1 11920296 11921846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0886 13 262 Acyl Lipid Metabolism Gene Families AT3G55290 26.336 2.80e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0886 - - gmx:100817513 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0886 1 11920296 11921846 Apr1g0886 1 11920296 11921846 ECH