Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0780 ATGTTTATTCAGTTTCAGTGTCTCCATTCCGAACTCAGCAACGTTTGTAGGTCCCTCTTAAGGACGAAGCAGTTACACGCATTGCTTTTGACGACCCATCTCTCACAAGACCCTTTTTATGCAACTAAAATTCTTAGGCTTTATGCTGCTAACAATGACATTAACTATGCCTACCACGTGTTCGACAAAACTACCAACCGAAGTGTCTTCCTCTGGAATTCAATGATTCGCGGTTTTGCGCAGTCCCAAAGATTTTTCAATGCAATCTCTCTGTTTAGAACCATGCTTGGGGGTGACACAAGTCCTGACAATTACACTTATGCCTGTGTTATACGTGCTTGTTCTGATAACTATGATTTTGGTGTTCTAAGACTTGTTCATGGAGGTGCTGTGGTTGCTGGGTTAGGATTGGACCCTATTTGTTGCAGTGCACTTGTGGCTGCTTATTCAAAACTAGGTCTTGTTCATGAGGCACGTAGAGTGTTTGATGGGATTGCTGGACCAGATTTAGTTTTGTGGAATTCGTTGATTTCTGGTTATGGGGGCTCTGGTTTGTGGGATGTAGGGATGCAGGTGTTTAGCTCTATGCGATTCATTGGGAAGAAGCCTGATGGATATACACTAGCTGGGTTGCTTGTGGGTGTTGCTGATGCTGGAGTGTTGAGCATTGGTGAAGGACTGCATGGTTTGAGTCTAAAGAGTGGGCTTGATTGTGATTCTCATGTTGGTAGTTTGCTGGTGAGTATGTACTCGCGGTGTAGGTGCATGGTTATGGCGTATAGAGTCTTTTGCAGTATTTTGAATCCTGATTTGGTCACATGGTCTGCTCTTATAGCTGGCCATTCTCAGTCTGGGGAGTATGAGAAGGTGCTGCACTTTTTCAGGGAGTTGAACATGGAAAACAAGAAGCTGGATTCTGTTTTGATTGCCAGTGTAATTGCTTCTGTAGCACAGACTGCAAATATAGGACTGGGATTTGAGATACATGGTTATGTTCTTCGGCATGGATTAGTGTCAGACGTCAAGGTCTCCTCTGCTCTCATAGACATGTATTCGAAGTGTGGTTTTTTGCACTTGGGAATCTGTGTTTTTAGGATGATGCCGGAACGGAATGTGATTTCATATAATTCAGTCATTTTGGGTCTCGGCTTGCATGGATGTGCTTCTGAGGCGTTCAGGACATTTGATGAGATGCTGGAGAAAGGATTGGTACCTGATGAAGCCACATTCTCTTCTCTGCTTTGTGCTTGTTGTCATGCTGGCCTTGTCAAAGAAGGCCGGGAGATTTTCCGGAGAATGGAAGATGAATGTAACATCAAAGCTAGGCCAGAACACTATGTTTACATGGTGAAGCTTCTTGGCAGTGCTGGGGAGTTAGAAGAGGCTTACAATCTCACCCTTGCCTTACCAGAACCAGTAGACAAGCCCATCCTGGGTGCCTTATTGTCATGCTGTAATTCTTTTGAAAATTCTGAGCTTGCAGAAACGTTATCTCATCAACTTTTTGAAAGTAATCCTGACAATAATGCTTACAGAGTTATGCTTTCTAATATATATGCTGGTGATGGGAGGTGGGATGATGTGAAGAAGTTGAGGGATAAAATGACTGGTGGTCTGAGAAAAATGCCTGGACTAAGCTGGATTGAAGGCAATTATTGCTAA 1662 0.435 MFIQFQCLHSELSNVCRSLLRTKQLHALLLTTHLSQDPFYATKILRLYAANNDINYAYHVFDKTTNRSVFLWNSMIRGFAQSQRFFNAISLFRTMLGGDTSPDNYTYACVIRACSDNYDFGVLRLVHGGAVVAGLGLDPICCSALVAAYSKLGLVHEARRVFDGIAGPDLVLWNSLISGYGGSGLWDVGMQVFSSMRFIGKKPDGYTLAGLLVGVADAGVLSIGEGLHGLSLKSGLDCDSHVGSLLVSMYSRCRCMVMAYRVFCSILNPDLVTWSALIAGHSQSGEYEKVLHFFRELNMENKKLDSVLIASVIASVAQTANIGLGFEIHGYVLRHGLVSDVKVSSALIDMYSKCGFLHLGICVFRMMPERNVISYNSVILGLGLHGCASEAFRTFDEMLEKGLVPDEATFSSLLCACCHAGLVKEGREIFRRMEDECNIKARPEHYVYMVKLLGSAGELEEAYNLTLALPEPVDKPILGALLSCCNSFENSELAETLSHQLFESNPDNNAYRVMLSNIYAGDGRWDDVKKLRDKMTGGLRKMPGLSWIEGNYC* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0780 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Apr1g0780 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Apr1g0780 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 549 - -
Apr1g0780 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Apr1g0780 553 TIGRFAM PPR: pentatricopeptide repeat domain 272 300 IPR002885 -
Apr1g0780 553 TIGRFAM PPR: pentatricopeptide repeat domain 71 103 IPR002885 -
Apr1g0780 553 TIGRFAM PPR: pentatricopeptide repeat domain 171 197 IPR002885 -
Apr1g0780 553 TIGRFAM PPR: pentatricopeptide repeat domain 409 436 IPR002885 -
Apr1g0780 553 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Apr1g0780 553 Pfam PPR repeat 141 163 IPR002885 -
Apr1g0780 553 Pfam PPR repeat 272 297 IPR002885 -
Apr1g0780 553 Pfam PPR repeat 171 197 IPR002885 -
Apr1g0780 553 PANTHER OS01G0545900 PROTEIN 5 549 - -
Apr1g0780 553 Pfam PPR repeat family 68 114 IPR002885 -
Apr1g0780 553 Pfam PPR repeat family 370 419 IPR002885 -
Apr1g0780 553 Pfam E motif 489 549 IPR046848 -
Apr1g0780 553 Gene3D Tetratricopeptide repeat domain 387 552 IPR011990 GO:0005515
Apr1g0780 553 Gene3D Tetratricopeptide repeat domain 129 223 IPR011990 GO:0005515
Apr1g0780 553 Gene3D Tetratricopeptide repeat domain 227 324 IPR011990 GO:0005515
Apr1g0780 553 Gene3D Tetratricopeptide repeat domain 4 125 IPR011990 GO:0005515
Apr1g0780 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Apr1g0780 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0780 Apr-Chr1 9537329 9539255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0780 28 549 Glycoside Hydrolase AT3G49170 31.758 2.03e-79 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0780 - - gmx:100820049 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0780 1 9537329 9539255 Apr1g0780 1 9537329 9539255 ECH