Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0749 ATGGGTGTTAGTGCAGCTTCTGTACTGAACCAACTCCTACATAGGCAAAACCTGAAGGCACAGCCACACCCAAACGCCACCAACATCAAAACAGTCACCAAAACAATTCTCACCTATCTCGAAGCCGGTAGAATCGGAAAAGCCGCATCTGTTCTCTTTGCATTCCCACAACCCTTCTCTTACTCTCTATATGCTCACTTCTTCCGACTCTGTTCCACCCACCGCGCCATCGTCGAAGCCCGCAAGCTCGAATCCCACTTGCTCACCTTCACCCCCAACCCCCCCATTTTCCTTCTCAACCGCGCCATTGAAACCTACGCCAAATGCAACTGTCTTCGCGATGCCCGCGATCTGTTCGACGAAATGCCCCATCGAGATGGTGGCTCTTGGAATGCTCTCATCACTGCTTATTCTCAATTGGGTTTCCCAGGCGAAGCTGTTTCCTTGTTCTTGCGTATGAATAGGTCCGGGGTTTTTCCCAATGAGGTTACCTTTGCTGGTGTACTTGCTTCTTGTGCTTCAGCTTCTGAGCTTCTTCTCTCCAAGCAGGTTCATGGGCTGGTCACAAAATTTGGTTTTTGTGGCAATGTGATCCTTGGGAGTTCCCTTGTCGATGTTTATGCCAAGTGTGGGGTTATGGTTGATGCTCGCATGATGTTTCATGAGATTCCGCGTCCTAATGCTGTCACTTGGAATGTCATTGTGAGGCGGTATCTTGATGCTGGTGATGCAAGGGAAGCTGTTTTCATGTTCTCGAGGATGTTTTCGAATTCTGCAATTAGGCCGTTGAGTTGTACTTTCTCTAACGCTCTTGTTGCTTGTTCCAGCATGTGTGCACTCGAGGAGGGGATGCAAATTCATGGGGTTGTTGTGAAGTTGGGTCTGCAGGCGAATAATGTTGTTTCGAGCTCGCTTGTCAACATGTATGCCAAGTGTGGCAAATTGGAGGATGGCTCTCGGGTGTTTTATGAGCTTGGTTTGAAAGATGTTGTGTCTTGGACTTGCATTGTGTCGGGGTATGCCATGAGTGGGAAAACATGGGAGGCAAGAAAGCTTTTTGATGAGATGCCTCAACGTAATGTGATCTCGTGGAATGCAATGTTGGCTGGATATACCCGATTTTTTGAATGGTCTGAGGCATTAAATTTTGTATATCTCATGCTTGATACAATTAATGAGGTGGATCATGTCACTCTTGGTTTGATGTTAAGTGTATCAGCGGGGCTTTCGGATCATGAAATGGGGAAACAGGTTCATGGTTATATTTATCGACATGGTTTCCAGTCAAATCTTATGGTCAGCAATGCCCTTCTTGACATGTATGGTAAATGTGGGAACTTGAACAGCGCCAGAGTTTGGTTTAACCAGATGAGTAATTGGCGTGACAGGGTTTCTTGGAATGCTTTATTGGCTAGCTATGGTCATCATCAATTAAGTGAACAAGCACTAACAATATTTTCAGAGATGCAGTGGGAGACAAAACCGACCAAATATACATTTGGAACCCTTTTAGTAGCGTGTGCAAATAGCTTTGCACTTTACCAAGGCAAACAGATTCATGGATTCATCATTAGACATGGATTTCATATAGATATTATAATCAGAACGGCTTTGATTTACATGTACTCTAAATGCCGTTGTCTTGAGTATGCTATTGAGGTTCTGAAGGGGGAGGTTTCCAGGGATGTGATCATTTGGAATACCATAATTTTGGGATGTTGTCACAATCATAGGAGTAGAGAAGTGTTCGAACTTTTTGGGATCATGGAAGCAGAAGGCATCAAGCCAGACCACGTGACCTTTGAAGGCATCCTGCTTGCTTGTATTGAAGAAGGCCTTGTTGATTCAGGCATTGAATGCTTTAAGTCAATGAACAATGAATACGGCATCCCGCCAAGGCTGGAGCATTATGACTGCATGATTGAACTCTACAGTCGGCATGGATACATGGATGAGCTTGAGAATTTTATGAAGACAATGACAATAGAGCCCACTATTCCTATGTTGAAAAGAGCCCTTGATGCTTGTCAAAAATATCGGTGCCCAAGATTGGGAGAATATATTTCAGAAAAAATTAATGAATTTAAACATTAA 2094 0.4417 MGVSAASVLNQLLHRQNLKAQPHPNATNIKTVTKTILTYLEAGRIGKAASVLFAFPQPFSYSLYAHFFRLCSTHRAIVEARKLESHLLTFTPNPPIFLLNRAIETYAKCNCLRDARDLFDEMPHRDGGSWNALITAYSQLGFPGEAVSLFLRMNRSGVFPNEVTFAGVLASCASASELLLSKQVHGLVTKFGFCGNVILGSSLVDVYAKCGVMVDARMMFHEIPRPNAVTWNVIVRRYLDAGDAREAVFMFSRMFSNSAIRPLSCTFSNALVACSSMCALEEGMQIHGVVVKLGLQANNVVSSSLVNMYAKCGKLEDGSRVFYELGLKDVVSWTCIVSGYAMSGKTWEARKLFDEMPQRNVISWNAMLAGYTRFFEWSEALNFVYLMLDTINEVDHVTLGLMLSVSAGLSDHEMGKQVHGYIYRHGFQSNLMVSNALLDMYGKCGNLNSARVWFNQMSNWRDRVSWNALLASYGHHQLSEQALTIFSEMQWETKPTKYTFGTLLVACANSFALYQGKQIHGFIIRHGFHIDIIIRTALIYMYSKCRCLEYAIEVLKGEVSRDVIIWNTIILGCCHNHRSREVFELFGIMEAEGIKPDHVTFEGILLACIEEGLVDSGIECFKSMNNEYGIPPRLEHYDCMIELYSRHGYMDELENFMKTMTIEPTIPMLKRALDACQKYRCPRLGEYISEKINEFKH* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0749 697 Gene3D Tetratricopeptide repeat domain 184 327 IPR011990 GO:0005515
Apr1g0749 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Apr1g0749 697 Pfam PPR repeat 303 325 IPR002885 -
Apr1g0749 697 Pfam PPR repeat 201 223 IPR002885 -
Apr1g0749 697 Pfam PPR repeat 435 458 IPR002885 -
Apr1g0749 697 Pfam PPR repeat 636 660 IPR002885 -
Apr1g0749 697 Pfam PPR repeat 362 388 IPR002885 -
Apr1g0749 697 Pfam PPR repeat 331 361 IPR002885 -
Apr1g0749 697 Pfam PPR repeat 229 256 IPR002885 -
Apr1g0749 697 Pfam PPR repeat 103 124 IPR002885 -
Apr1g0749 697 Pfam PPR repeat family 129 173 IPR002885 -
Apr1g0749 697 Pfam PPR repeat family 462 508 IPR002885 -
Apr1g0749 697 Pfam PPR repeat family 561 607 IPR002885 -
Apr1g0749 697 Gene3D Tetratricopeptide repeat domain 558 696 IPR011990 GO:0005515
Apr1g0749 697 Gene3D Tetratricopeptide repeat domain 328 415 IPR011990 GO:0005515
Apr1g0749 697 Gene3D Tetratricopeptide repeat domain 55 183 IPR011990 GO:0005515
Apr1g0749 697 Gene3D Tetratricopeptide repeat domain 416 515 IPR011990 GO:0005515
Apr1g0749 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Apr1g0749 697 TIGRFAM PPR: pentatricopeptide repeat domain 565 597 IPR002885 -
Apr1g0749 697 TIGRFAM PPR: pentatricopeptide repeat domain 331 360 IPR002885 -
Apr1g0749 697 TIGRFAM PPR: pentatricopeptide repeat domain 464 490 IPR002885 -
Apr1g0749 697 TIGRFAM PPR: pentatricopeptide repeat domain 129 162 IPR002885 -
Apr1g0749 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 480 568 - -
Apr1g0749 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 481 - -
Apr1g0749 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 571 695 - -
Apr1g0749 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Apr1g0749 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 262 IPR002885 -
Apr1g0749 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 481 - -
Apr1g0749 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 480 568 - -
Apr1g0749 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 571 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0749 Apr-Chr1 8952255 8955068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0749 18 695 Glycoside Hydrolase AT3G49170 28.986 4.08e-86 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0749 - - gmx:100775626 1125.54