Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0748 ATGAGGATGGTGGAATTGCATGGCCTGGCCCGCACGTTTCAGTCATGGTCCTCCATTTGTGAAGGGAGACAACTCCACGTGGCATTCCTTAAAACCGGTATTCTTAATTCCTCCCTCGCTATTGCGAACCGGCTTCTCCAGTTATACTCGGGCCACGGCTGTCTCCACGATGCGTCTAACTTGTTCGACGAAATGCCCCACACAAATGCTTTCTCATGGAACACACTCATCCAAGCCTACCTCAACTCAGGCGCCACCCACATGTCCCTCCACTTGTTCCATGCCATGCCTCACAAGACTCACTACTCCTGGAACATGGTCGTTTCTTCATTTGCCAAGTGTGGTCACCTTCAACTAGCTCATTCTCTCTTCAATGCCATGCCCTCAAAGAACCACCTTGTCTGGAATTCCATCATTCATGGTTATTCCCGACATGGGCATCCGAGGAAAGCACTGTTACTATTCAAGAACATGAATTCTGACCCTTTGCAAATGCTGTACCGGGATGCTTTTGTGTTGGCAACTGTTCTTGGCGCATGTGCTGAGTTATTGGCTCTCAACTGTGGGAAACAAGTCCATGCACGTGTTTTCATTGATGGCCTGGGATTGGAAGAACTTGACAAGGTCTTGTGCAGCTCACTGATTAATTTGTATGGGAAATGTGGTGATTTGGATAGTGCTGCTCGTGTTATGAGTTTTGTGAGGGAAGTGGATGATTTCTCTCTGTCAGCTTTGATATCTGGTTATGCAAATGCCGGAAGAATAGGAGATGCAAGAAGGGCTTTTGAGAGTAAGGTTGATCCATGTGCTGTGTTGTGGAACTCCATTATTTCGAGTTATGTATCCAATGGTGAGGAAATAGAAGCCTTGGTTCTTTTCAATAGAATGCGCAGGAATGGGGTTTGGGGAGATATCTCTGCCGTTGTTAACATTTTGAGTGCAAGTAGTAGCTTACTTCTTATTGAACTTGTTGAGCAAATGCATGCCTTTGCTTGTAGAGCTGGGGTAATTCATGATATAGTGGTTGGTAGTGCTCTACTTGATGCCTACTCCAAGTGTCAAAGCCATTATGAAGCTTGCAAGTTGTTCAGTGAGCTCAAAGCTTATGATATGATATTGCTTAATACTATGATCACTGTGTATTCTAATTGTGGAAGAATCGAAGATGCAAAACAGATTTTTAACACAATGTCTAGTAAAACCTTAATTTCATGGAATTCAATCCTAGTTGGCCTGACTAAGAATGCATGTCCAAGTGAAGCATTAGATATTTTTTGTCAGATGAATAAGCGGGACTTGAAAATGGACAAGTTTAGCTTTTCCAGTGTTATCAGTGCTTGTGCCAGCAAATCATTCCTTGAGCTTGGTGAGCAGGTCTTTGGTAAAGCCGTTACCCTTGGGCTTGAATCTGACCAGATAATTTCTACTTCCCTTGTTGATTTTTATTGTAAATGTGGTTTTGTTGAGATAGGGCGTAAATTTTTTGATGGAATGATGAAATCTGATGAAGTTTCATGGAATACAATGTTGATGGGATATGCCACAAATGGATATGGTTTTGAAGCATTGACACTCTTTAGCGAAATGAGGTGCAGTGGTGTGAGGCCTTCTGCTGTTACTTTTACTGCAGTTCTTTCAGCCTGTGATCATAGTGGTCTGGTTGAAGAGGGAAGAAATGTGTTCCATACTATGAAGCATAACTATAATATAACTCTGGGGATTGAACATTACTCTTGTATGGTTGACCTTTTTGCACGAGCTGGTTGCTTTGAGGAAGCAATGAATCTTATTGAAGAGATGCCTTTTCAGGCTGATGCGAACATGTGGTTGTCAGTACTGCGAGGCTGCATAGCCCATGGAAACAAGAGCATTGGCAAGATGGCTGCAGAGAAAATTATTCAGCTTGATCCTGAAAATCCAGGTGCTTATATACAATTATCTAACATTCTTGCATCTTCTGAGGACTGGGAAGAATCAGCACAAGTAAGAGAGTTGATGAGAGGTAAGCATGTTCAGAAGATTCCTGGTTGCAGTTGGGCAGATTGTTGA 2049 0.428 MRMVELHGLARTFQSWSSICEGRQLHVAFLKTGILNSSLAIANRLLQLYSGHGCLHDASNLFDEMPHTNAFSWNTLIQAYLNSGATHMSLHLFHAMPHKTHYSWNMVVSSFAKCGHLQLAHSLFNAMPSKNHLVWNSIIHGYSRHGHPRKALLLFKNMNSDPLQMLYRDAFVLATVLGACAELLALNCGKQVHARVFIDGLGLEELDKVLCSSLINLYGKCGDLDSAARVMSFVREVDDFSLSALISGYANAGRIGDARRAFESKVDPCAVLWNSIISSYVSNGEEIEALVLFNRMRRNGVWGDISAVVNILSASSSLLLIELVEQMHAFACRAGVIHDIVVGSALLDAYSKCQSHYEACKLFSELKAYDMILLNTMITVYSNCGRIEDAKQIFNTMSSKTLISWNSILVGLTKNACPSEALDIFCQMNKRDLKMDKFSFSSVISACASKSFLELGEQVFGKAVTLGLESDQIISTSLVDFYCKCGFVEIGRKFFDGMMKSDEVSWNTMLMGYATNGYGFEALTLFSEMRCSGVRPSAVTFTAVLSACDHSGLVEEGRNVFHTMKHNYNITLGIEHYSCMVDLFARAGCFEEAMNLIEEMPFQADANMWLSVLRGCIAHGNKSIGKMAAEKIIQLDPENPGAYIQLSNILASSEDWEESAQVRELMRGKHVQKIPGCSWADC* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0748 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Apr1g0748 682 PANTHER OS07G0578800 PROTEIN-RELATED 106 165 IPR045215 GO:0003723|GO:0009451
Apr1g0748 682 PANTHER OS07G0578800 PROTEIN-RELATED 11 99 IPR045215 GO:0003723|GO:0009451
Apr1g0748 682 PANTHER OS07G0578800 PROTEIN-RELATED 167 682 IPR045215 GO:0003723|GO:0009451
Apr1g0748 682 Pfam E motif 619 679 IPR046848 -
Apr1g0748 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Apr1g0748 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Apr1g0748 682 SUPERFAMILY TPR-like 352 662 IPR011990 GO:0005515
Apr1g0748 682 PANTHER OS03G0849700 PROTEIN 11 99 - -
Apr1g0748 682 PANTHER OS03G0849700 PROTEIN 106 165 - -
Apr1g0748 682 PANTHER OS03G0849700 PROTEIN 167 682 - -
Apr1g0748 682 Pfam PPR repeat family 402 448 IPR002885 -
Apr1g0748 682 Pfam PPR repeat family 502 548 IPR002885 -
Apr1g0748 682 Gene3D Tetratricopeptide repeat domain 502 681 IPR011990 GO:0005515
Apr1g0748 682 Gene3D Tetratricopeptide repeat domain 5 196 IPR011990 GO:0005515
Apr1g0748 682 Pfam PPR repeat 241 263 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 43 65 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 375 400 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 271 301 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 134 160 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 476 501 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 102 131 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 210 231 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 71 97 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 344 368 IPR002885 -
Apr1g0748 682 Pfam PPR repeat 576 600 IPR002885 -
Apr1g0748 682 Gene3D Tetratricopeptide repeat domain 264 370 IPR011990 GO:0005515
Apr1g0748 682 Gene3D Tetratricopeptide repeat domain 371 464 IPR011990 GO:0005515
Apr1g0748 682 Gene3D Tetratricopeptide repeat domain 199 263 IPR011990 GO:0005515
Apr1g0748 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 130 IPR002885 -
Apr1g0748 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Apr1g0748 682 TIGRFAM PPR: pentatricopeptide repeat domain 577 600 IPR002885 -
Apr1g0748 682 TIGRFAM PPR: pentatricopeptide repeat domain 504 537 IPR002885 -
Apr1g0748 682 TIGRFAM PPR: pentatricopeptide repeat domain 374 399 IPR002885 -
Apr1g0748 682 TIGRFAM PPR: pentatricopeptide repeat domain 134 158 IPR002885 -
Apr1g0748 682 TIGRFAM PPR: pentatricopeptide repeat domain 271 301 IPR002885 -
Apr1g0748 682 TIGRFAM PPR: pentatricopeptide repeat domain 403 436 IPR002885 -
Apr1g0748 682 TIGRFAM PPR: pentatricopeptide repeat domain 102 132 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0748 Apr-Chr1 8928982 8932530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0748 22 681 Glycoside Hydrolase AT3G49170 29.645 7.20e-97 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0748 - - aprc:113869023 1192.56