Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0747 ATGTACCCCATTTTGAAGCAAACGCAAGCTCCTCACACTACTCTTTCTTATTGCTCTCTTCTCCTAGAGCACTGTTTATCCCATAAATCCCTTAACCTTGTCAAAACCGTGCATGCCCACTTCCTCAAACTAGGTCTTAACACCTACACCTATTTGGGTAATCGCTGTCTTGATCTCTACTCTGAGTTCGGTCACATTAACGATGCATTGAAGGTGTTTGATGATATTTCTCACAAGAACTCCACGTCCTGGAACATTTGCATGAAAGGGTTGCTCAAAAGTGGCCAGCTTGGCAGGGCCCGCCACGTGTTTGATGCAATGCCCGTTAGAGATGCTGTTAGTTGGAACTCATTGATTTCAGGTTATGCTTCTCATGGGTTTGTTAGTCATGCCTTGGAACTTTTTGTTGAAATGCAAGGTAATGGTGTGAGACCAAGTGGGTTCACTTTCTCCATTTTGATGTCACTTGTGTCTAGTCCCTGTCATGCTAAGCAGATTCATTGTAGGATGATCAGAAGTGGGATAGATTTGTCTAATGTAGTACTTGGGAATTCGTTGATAACTATGTATGGGAAGCTTGGTCTTGTTGATTGTGCTTTTGGTGTGATTTTGACTATGAAGCAATTTGATGTCATATCTTGGAACTCTTTGATCTGGGCCTTTCATAGAGCTGGATACCATGAGCTGGCTTTAGAACAGTTCTATAACATGAGAGCTATGGAGTTGTTACTTGACGAGTTTACGTGTTCAATATTGATGAGTGTCTGTTCTAACTTGCGAGATTTGGACAAGGGTAAGCAAGTTTTTGCCTTTTGTTTCAAGATGGGATTTGTTTATAATAGCATTGTGTCAAGTGCTGCTATTGACTTCTTTTCCAAATGCAACAGATTGGAGGATTCTGTCAGGCTCTTTGAGGAACAAGGTCAATGGGATTCGGCTCTGTGCAATTCCATGATTTCGTGCTATGCTCGACATGATTTAGGGGAAGATGCTTTACAACTTTTTGTGCTGACACTGAGGAAGAATATCAGGCCAACAGAATACATGGTTAGCTGTCTTCCGAGTTCTGTTTCAATTTTCTTACCAGTAGAAATGGGTAATCAAATCCATTCTTTGGTTCCTAAATTGGGTTTCGAGTTAGATGCAGTTGTTGCCAATTCACTTGTTGATATGTATGCTAAATTTGGATTTATTGATGATGCCTTGAATATCTTCAATTCAATGAAAGTAAAAGATCTTGTATCATGGAACACTATAATGATGGGACTGACTTACAATGGCAAAGTGTCTGTGACCATGGACCTCTTCAGGGAATTGATTAGAGAAGGCATAGAACCAGATAGAATAACACTTACTGCAGTTCTACTAGCATGCAGCTATGGGAGTTTGGTTGATGAAGGAATTGAAATATTTTCCTCAATGGAGATGGAATTTGGAGTAAAACCGGGGGAAGAACATTATGCTTGCATCGTAGAGATGTTGAGTAAAGCTGGTAAGCTCAAAGAAGCCATTGACATACTAGAAACAATGCCATATAGAACAAACTCTGATATTTGGAGGTCAATTCTTTCTGCATGTGCAACTTATGGAGATCTGCTAGTTATTGAAAGAGTTGCAAAGAAAATAATGGATAGGGAACCGCAGACATCCTTACCTTACTTGGTTTTGGCTGAGGCATATCAAATAAGGGGTAGATGGGAGAGCATGGTTAGAATGAGGAAGGCTGTGGAAAATAGAGGTACTAAAGAGTTCATCGGATACAGTTGGGTTGGAATAAAAAATCATGTATACACTTTTTCTTCAAATCAATTACAACATTATGGTGGCAAGGATCTTTATCTGCTATTGAATTTACTGGTCTGGGAGATGGAGACTGAAGGTAATCTTTAA 1890 0.3989 MYPILKQTQAPHTTLSYCSLLLEHCLSHKSLNLVKTVHAHFLKLGLNTYTYLGNRCLDLYSEFGHINDALKVFDDISHKNSTSWNICMKGLLKSGQLGRARHVFDAMPVRDAVSWNSLISGYASHGFVSHALELFVEMQGNGVRPSGFTFSILMSLVSSPCHAKQIHCRMIRSGIDLSNVVLGNSLITMYGKLGLVDCAFGVILTMKQFDVISWNSLIWAFHRAGYHELALEQFYNMRAMELLLDEFTCSILMSVCSNLRDLDKGKQVFAFCFKMGFVYNSIVSSAAIDFFSKCNRLEDSVRLFEEQGQWDSALCNSMISCYARHDLGEDALQLFVLTLRKNIRPTEYMVSCLPSSVSIFLPVEMGNQIHSLVPKLGFELDAVVANSLVDMYAKFGFIDDALNIFNSMKVKDLVSWNTIMMGLTYNGKVSVTMDLFRELIREGIEPDRITLTAVLLACSYGSLVDEGIEIFSSMEMEFGVKPGEEHYACIVEMLSKAGKLKEAIDILETMPYRTNSDIWRSILSACATYGDLLVIERVAKKIMDREPQTSLPYLVLAEAYQIRGRWESMVRMRKAVENRGTKEFIGYSWVGIKNHVYTFSSNQLQHYGGKDLYLLLNLLVWEMETEGNL* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0747 629 TIGRFAM PPR: pentatricopeptide repeat domain 385 413 IPR002885 -
Apr1g0747 629 TIGRFAM PPR: pentatricopeptide repeat domain 83 108 IPR002885 -
Apr1g0747 629 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Apr1g0747 629 TIGRFAM PPR: pentatricopeptide repeat domain 315 346 IPR002885 -
Apr1g0747 629 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Apr1g0747 629 PANTHER OS03G0435200 PROTEIN 1 626 - -
Apr1g0747 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 411 IPR002885 -
Apr1g0747 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Apr1g0747 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Apr1g0747 629 Gene3D Tetratricopeptide repeat domain 267 359 IPR011990 GO:0005515
Apr1g0747 629 Gene3D Tetratricopeptide repeat domain 462 605 IPR011990 GO:0005515
Apr1g0747 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Apr1g0747 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Apr1g0747 629 Gene3D Tetratricopeptide repeat domain 5 160 IPR011990 GO:0005515
Apr1g0747 629 Gene3D Tetratricopeptide repeat domain 363 461 IPR011990 GO:0005515
Apr1g0747 629 Gene3D Tetratricopeptide repeat domain 161 266 IPR011990 GO:0005515
Apr1g0747 629 PANTHER OS07G0578800 PROTEIN-RELATED 1 626 IPR045215 GO:0003723|GO:0009451
Apr1g0747 629 Pfam PPR repeat family 111 155 IPR002885 -
Apr1g0747 629 Pfam PPR repeat family 411 458 IPR002885 -
Apr1g0747 629 Pfam PPR repeat 212 239 IPR002885 -
Apr1g0747 629 Pfam PPR repeat 184 210 IPR002885 -
Apr1g0747 629 Pfam PPR repeat 487 510 IPR002885 -
Apr1g0747 629 Pfam PPR repeat 83 108 IPR002885 -
Apr1g0747 629 Pfam PPR repeat 315 339 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0747 Apr-Chr1 8924286 8926201 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0747 100 627 Glycoside Hydrolase AT3G49170 30.970 1.11e-80 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0747 - - gmx:102663822 1079.7