Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0746 ATGGCTTCCTTCTTGTTGGGAAGGTCTAGGATCTTCACTCTTCACAAAAACCTCTCCTTCTTGTCAGCACCACTTCTTAACCATACCCCTTCACCTTCTTCCTTCTTTCCATCAACTTATAACCCTTTTTTGTGCCGTGAGATATCTCATGCACCAACGGGTAACAACTCAGCTACCCTTTCCTCCTTCTCGCGTTTTGAATCCACCAAAGCTGCGGCACAATTAGGATTGGACCAAGATGTCTGTGAGGATGATCATAATCAGGTCATTGATTTTCCTGGAGGGAAAGTTGCATTTACCTCTGAGATGAGATTCATTTCTGAGTCTCCTCAGAAAAGGGTGCCCTGTTATCGAGTTCTTGATGAGAATGGCGAACTCGTGACATACAGCAACTATGTACAGGTTAGCAAGGAAATGGCTGTGAAGATGTACTCTGACATGGTCACTCTTCAAAGTATGGACAGCATATTCTATGAAGTGCAGAGGCAAGGAAGAATTTCATTCTATCTCACCTCAATGGGAGAAGAAGCAGTTAACATTGCATCTGCAGCAGCACTTGCTCCTGATGATATTGTATTGCCTCAGAAATTCAGAACACAACTTCCTCAAGCTGTGGGCGCTGCTTATTCCCTTAAAATGGATGGAAAAAGTGCATGTGCAGTCACTTATTGTGGGGATGGGGGGAGCAGTGAGGGAGATTTCCATGCTGGTATGAATTTTGCAGCAGTAATGGAGGCTCCTGTTGTTTTTATCTGCCGCAACAATGGATGGGCCATCAGTACCCCTATAGAAGAACAATTTAGAAGTGATGGAATTGTAGTCAAAGGTCAAGCTTATGGCATCTGGAGTGTCAGAGTCGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTTCATACTGCTAGAGAAGTCGCTATAAGAGAAAAAAGACCAGTTTTAATTGAGGCTCTCACTTATAGAGTAGGACACCACTCTACCTCTGATGATTCAACTAAGTACCGGCCAATCGATGAGATTGAATATTGGAAGATGGCAAGGAATCCTGTAAATAGATTCAAAAGATGGGTAGAAAGGAATGGTTGGTGGAGCGACAAGGATGAATTGGAGCTTAGAAGTAGTATCAGGAAGCAGTTAATGCATGCGATTCAGGTGGCAGAGAAAGCACAGAAACCTCCACTTGAGGACATGTTTAATGATGTCTATGACCAAGTGCCATCAAACCTTAAGGAGCAAGAGAGGGTACTAAGAGAAACCATAGAGAAGCATCCCAAAGACTATCCTTCTGATGTTCCTTTGTAG 1299 0.4334 MASFLLGRSRIFTLHKNLSFLSAPLLNHTPSPSSFFPSTYNPFLCREISHAPTGNNSATLSSFSRFESTKAAAQLGLDQDVCEDDHNQVIDFPGGKVAFTSEMRFISESPQKRVPCYRVLDENGELVTYSNYVQVSKEMAVKMYSDMVTLQSMDSIFYEVQRQGRISFYLTSMGEEAVNIASAAALAPDDIVLPQKFRTQLPQAVGAAYSLKMDGKSACAVTYCGDGGSSEGDFHAGMNFAAVMEAPVVFICRNNGWAISTPIEEQFRSDGIVVKGQAYGIWSVRVDGNDALAVYSAVHTAREVAIREKRPVLIEALTYRVGHHSTSDDSTKYRPIDEIEYWKMARNPVNRFKRWVERNGWWSDKDELELRSSIRKQLMHAIQVAEKAQKPPLEDMFNDVYDQVPSNLKEQERVLRETIEKHPKDYPSDVPL* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0746 432 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 62 197 - -
Apr1g0746 432 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 199 432 - -
Apr1g0746 432 CDD TPP_E1_PDC_ADC_BCADC 143 385 - -
Apr1g0746 432 Pfam Dehydrogenase E1 component 199 392 IPR001017 GO:0016624
Apr1g0746 432 Gene3D - 198 430 - -
Apr1g0746 432 Gene3D - 85 197 - -
Apr1g0746 432 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 114 427 IPR029061 -
Apr1g0746 432 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 62 197 - -
Apr1g0746 432 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 199 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0746 Apr-Chr1 8916316 8921225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0746 85 270 Acyl Lipid Metabolism Gene Families AT5G09300 58.475 5.81e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0746 K00166 - gmx:100796766 696.427