Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0732 ATGCAAATCACCAAGTTGCCTGGAATCAAACTCACAGCGAGTTTTAACATTTGCACATGGAGAAACAACCCATCACATTGGTCCCATTCAATAAGGAACCACATTGAGAAAGGATCATGTTTAGGGGCTCTTGTTGTGTATAACCAAATCCGACATGTAGTATGCGACTCCACTGTGGTCCCTCTGTTACTGAAGGTTTGCGCTTCTCTTCGCTTCCTTAATTACGTGAAGGCCTTGCATGCAGAGTCCATCAAGGCCGGTTCAGACACCGACATGTTCATCGAAACCGCATTGCTTGGAGCTTACGCCAAATGCGGCGTCGTTCGGGACGCACGTTACCTGTTTGATTCAATGCCTGAAAGAAATGTTGTGACTTGGAATGCTATGATCAGTGGGTACTTGAGAAATGGAGACACGGAATCTGCTTCACTTCTGTTTGAGGAGATGCCGTGGAAAACCCAAGTGACTTGGAGTCAGATGATTCGTGGGTTTGCTAGGAATGGGGATGTTGACACTGCTAGGAAGTTGTTTGATAGGGTTCCACATGAGGTGAAGGATGTGGTAACATGGACTGTGATGGTCGATGGGTATGCTAGAAAAGGGGATATGGAAGCTGCCAGGGAGATCTTTGAGGTGATGCCTGAAAGGAATTGTTTTGCATGGTCATCTATGGTTTTTGGGTATTTCAAGAAGGGAAATGTTACTGAGGCTGAAAATGTTTTCAATCAAGTTCCGGTTCAAAATTTGGAGATTTGGAATTCCATGATAGCTGGCTATGTCCAGAATGGATTTGGTGAGAAAGCACTGGAAGCTTTTGAGGAAATGGGGGTCGAAGGGTTTGAGCCAGATGAGTTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGCTGGGGCGCTTGGATGTTGGTAAGCAAATTCATTACATGATAAAACATAAAGGGATAACTGTGAATCAGTTTGTTTTGAGTGGATTGGTTGACATGTATGCGAAATGTGGTGACTTGGTCAATGCAAGGTCGGTTTTTGAAGGGTACACTGAGAGGAACATCTTTTGCTGGAATGCCATGATTTCGGGTTTTGCCATCAATGGAAAATGCCGAGAGGTTCTTGAGTTTTTTGGCAGGATGGAGGATTCAAGTATGAGGCCTGATGCTGTCACCTTTCTTACTGTACTCTCGGCTTGTGGTCATGAGGGTTTGGTAAGGGAAGCTTTGGAAGTGATATCTAAAATGAGGGCATGTGGAGTTGAAATAGGCATCAAGCATTACGGATGCATGGTTGACCTGTTGGGCAGAGCAGGAAGATTAAAGGATGCTTATGACCTGATAAAAAGAATGCCAACGAAATCTAACGACACAGTTTTGGGAGCAATGCTAGGTGCATGCCGGATTCATTCAGATATGAAAATGGCAGAACAAGTAATGAAATTGGTCGGTTCAGACTCTGCTACAGGTGTTAATTCCCACAATGTGCTTTTGTCTAATATCTATGCAGCGTCTGAAAAATGGGAGAAAGCTGAGAGGATGAGGAGGGTCATGGAAGTTGGAGGGTCTCAAAAGACACCCGGGTGTAGTTCCTTAGTCTTTAGCGACTCTTGTGGGTTTAAGTGA 1611 0.4444 MQITKLPGIKLTASFNICTWRNNPSHWSHSIRNHIEKGSCLGALVVYNQIRHVVCDSTVVPLLLKVCASLRFLNYVKALHAESIKAGSDTDMFIETALLGAYAKCGVVRDARYLFDSMPERNVVTWNAMISGYLRNGDTESASLLFEEMPWKTQVTWSQMIRGFARNGDVDTARKLFDRVPHEVKDVVTWTVMVDGYARKGDMEAAREIFEVMPERNCFAWSSMVFGYFKKGNVTEAENVFNQVPVQNLEIWNSMIAGYVQNGFGEKALEAFEEMGVEGFEPDEFTVVSVLSACAQLGRLDVGKQIHYMIKHKGITVNQFVLSGLVDMYAKCGDLVNARSVFEGYTERNIFCWNAMISGFAINGKCREVLEFFGRMEDSSMRPDAVTFLTVLSACGHEGLVREALEVISKMRACGVEIGIKHYGCMVDLLGRAGRLKDAYDLIKRMPTKSNDTVLGAMLGACRIHSDMKMAEQVMKLVGSDSATGVNSHNVLLSNIYAASEKWEKAERMRRVMEVGGSQKTPGCSSLVFSDSCGFK* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0732 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Apr1g0732 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Apr1g0732 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Apr1g0732 536 TIGRFAM PPR: pentatricopeptide repeat domain 251 284 IPR002885 -
Apr1g0732 536 TIGRFAM PPR: pentatricopeptide repeat domain 423 447 IPR002885 -
Apr1g0732 536 TIGRFAM PPR: pentatricopeptide repeat domain 386 418 IPR002885 -
Apr1g0732 536 TIGRFAM PPR: pentatricopeptide repeat domain 124 149 IPR002885 -
Apr1g0732 536 TIGRFAM PPR: pentatricopeptide repeat domain 188 218 IPR002885 -
Apr1g0732 536 TIGRFAM PPR: pentatricopeptide repeat domain 96 124 IPR002885 -
Apr1g0732 536 TIGRFAM PPR: pentatricopeptide repeat domain 351 385 IPR002885 -
Apr1g0732 536 TIGRFAM PPR: pentatricopeptide repeat domain 155 179 IPR002885 -
Apr1g0732 536 Pfam E motif 487 526 IPR046848 -
Apr1g0732 536 Gene3D Tetratricopeptide repeat domain 217 319 IPR011990 GO:0005515
Apr1g0732 536 Gene3D Tetratricopeptide repeat domain 322 532 IPR011990 GO:0005515
Apr1g0732 536 Gene3D Tetratricopeptide repeat domain 153 216 IPR011990 GO:0005515
Apr1g0732 536 PANTHER BNACNNG13520D PROTEIN 23 526 - -
Apr1g0732 536 PANTHER OS01G0913400 PROTEIN-RELATED 23 526 - -
Apr1g0732 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 183 IPR002885 -
Apr1g0732 536 Pfam PPR repeat 423 448 IPR002885 -
Apr1g0732 536 Pfam PPR repeat 188 218 IPR002885 -
Apr1g0732 536 Pfam PPR repeat 155 179 IPR002885 -
Apr1g0732 536 Pfam PPR repeat 220 243 IPR002885 -
Apr1g0732 536 Pfam PPR repeat family 121 149 IPR002885 -
Apr1g0732 536 Pfam PPR repeat family 250 295 IPR002885 -
Apr1g0732 536 Pfam PPR repeat family 349 395 IPR002885 -
Apr1g0732 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Apr1g0732 536 Gene3D Tetratricopeptide repeat domain 25 152 IPR011990 GO:0005515
Apr1g0732 536 SUPERFAMILY TPR-like 73 219 IPR011990 GO:0005515
Apr1g0732 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 152 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0732 Apr-Chr1 8712939 8714561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0732 31 528 Glycoside Hydrolase AT3G49170 25.430 8.36e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0732 - - aprc:113850906 1088.94