Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr1g0730 | ATGAGTCACCGAGGAATGGGCCGTGACGACGACGACGACGACGACGAGGAGTACGAGGAGGAGGAGCAGGTTGCCGACTTCGACGAAGAAGTGGACGAGGAGGAAGAGGATAATAGAGGACGCAGTGGCGGCAGGAAGCGGAGAAGATCTGGTTTCATCGACGATGATGCCGAGGAGGTTGACGAGGACGAGGAGGAAGAGGATGACGATGACGAGGATTTCGATGGCCGAGGTGGTCGCAGGCGTCAGTATAAGAAGGTTTCTGCTTCCAATTTTTTCGACGAGGAGGCTGTGGTCGATAGTGATGAAGAGGAGGAAGAGGAGGAAGGCGAAGATGACTTCATTGTTGAGGGTGGAGCTGATCTACCAGAAGAAGATGATGGGAGAAGGATGCGTAGTAGCCGTATGCTGCCACATCACCAAGAAGATCATGAAGATCTTGAAGCTATGGCCAGAAGCATTCAGGAAAGATATGGAAGGCGAGTAACAGATTATTCTGAAGAAACAACAGATGTTGAACAACAAGCACTTTTGCCATCTGTGAGAGATCCAAAGCTGTGGATGGTCAAATGTGCGATTGGTCGTGAGCGAGAAACAGCTGTTTGCCTCATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCAGATCAGCTATTGCTCTTGATCATCTAAAAAATTATATATATGTGGAAGCAGATAAAGAGGCTCATGTTAGAGAGGCTTGCAAAGGTCAGCGCAATATATTTGGCCAAAAAATAACGCTTGTTCCTATCAGAGAAATGACTGATGTTCTGTCAGTTGAAAGCAAGGCAATTGACCTTGCCAGAGATACATGGGTCAGAATGAAGATTGGGACTTACAAAGGGGATCTTGCCAAAGTAGTGGATGTTGATAATGTGCGGCAGAGAGTTACTGTGAAACTAATTCCAAGGGTAGACTTACAGGCCCTTGCAAACAAATTGGAAGGTAGGGAAGTTGTGAAAAAGAAGGCTTTTGTTCCTCCTCCTCGATTTATGAATGTCGATGAAGCAAGGGAACTGCATATTCGTGTGGAGCATAGACGTGATGCATATGGGGAAAGATTTGATGCGATTGGCGGCATGATGTTCAAAGATGGATTCTTATACAAAACTGTATCAATAAAATCCATTAGTGCTCAGAACATCAAACCTACTTTTGATGAGCTTGAAAAATTTCGTAAACCGGGTGAGAGTGGTGATGGTGATGTTGCTAGTTTGTCAACTTTGTTTGCAAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCTGTCATTATTGTCAAGGGCGACTTAAAGAACTTGAAGGGGTGGGTAGAGAAAGTTGATGAAGATAATGTTCATATAAGACCAGAAATTAAGGGTCTTCCGAAAACTCTCGCAGTGAATGAAAAGGAACTTTGTAAATATTTTGAACCTGGAAATCATGTCAAGGTTGTTACTGGTGCTCAAGAGGGTGCTACTGGAATGGTTGTGAAGGTGGAGCAACATGTCTTGATCTTGATATCTGATACAACAAAAGAGCATATCCGTGTATTTGCTGATGATGTTGTTGAAAGTTCTGAAGTGACCACTGGAGTTACAAGAATCGGGGACTATGAACTTCGAGATCTTGTATTGCTAGATAATTTAAGCTTTGGCGTGATAATACGTGTAGAAAGTGAAGCATTTCAGGTTCTTAAAGGGGTTCCTGACAGACCTGAAGTTGTGCTTGTTAAATTAAGAGAGATCAAGTGTAAGATAGAGAAGAAAATAAGTGTGCAGGATAGGTTTAAGAATACGGTATCATCAAAGGATGTTGTGCGGATTGTTGATGGTCCGTGCAAAGGAAAACAAGGTCCTGTGGAGCACATATATAGAGGAATCCTGTTCATCTTTGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGCAAAGGCCCAATCTTGTGTAGTTGTGGGAGGCTCACGCTCCAATGGTGACCGAAATGGTGATGCCTACTCAAGATTTTCCAGCCTTAGGAGTCCACATCGTATTCCACCATCTCCAAGAAGATTTTCTCGAGGAGGGCCTCCAGTTAATTCTGGAGGGAGGCATAGGGGCGGTAGGGGGGGACATGATGGTCTGGCAGGTGCAACTGTTAAAGTACGCCAGGGTCCTTATAAAGGTTATCGTGGCCGTGTTATAGAAGATAAAGGGGCATCTGTTCGTGTTGAATTGGAATCCCAAATGAAGGTTGTGACAGTTGACCGCAACCATATATCTGACAATGTGGCTGTAACCCCATATCGGGACACGTCTCGCTATGGGATGGGAAGTGAAACCCCTATGCATCCTTCTCGAACTCCCTTACATCCGTATATGACTCCTATGAGAGATCCTGGAGCTACACCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACTCCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAACCAGTCCACAGTACCAGCCAGGAAGCCCCCCTTCACGGCCGTATGAAGCACCAACTCCTGGTGCTGGTTGGGCGAGCACTCCTGGTGGTAATTATAGCGAGGCTGGGACACCACGGGACAGTTCTGCTTATGTAAATGCTCCAAGCCCATATTTACCATCAACACCTGGTGGGCAGCCAATGACACCAAATTCGGCATCTTATCTTCCTGGCACCCCTGGTGGACAGCCTATGACTCCAGGCACTGGTGGTCTGGACATGATGTCTCCAGTTTTAGGTGGAGTACACGAAGGGCCATGGTTCATGCCAGACATATTAGTCAATGTACACAGAGCAGGAGAGGAATCTGTTGGAATTATAAGAGAGGTTCTTCCGGATGGCTCTTACAAGGTTGCTCTTGGTTCTAGTGGAAATGGTGAAACGATAACAGCCATTCCTAATGAAATGGAGGCTGTGGTACCAAGAAAATCAGACAAAATTAAAATTATGGATGGGGCATTGCGTGGTGCCACTGGCAAATTAATTGGTGTAGATGGTACTGATGGAATTGTAAAGGTAGATGACACGTTGGATGTCAAGATTTTAGATCTAGTTATTTTGGCTAAATTAGCTCAACCTTGA | 3126 | 0.4507 | MSHRGMGRDDDDDDDEEYEEEEQVADFDEEVDEEEEDNRGRSGGRKRRRSGFIDDDAEEVDEDEEEEDDDDEDFDGRGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGADLPEEDDGRRMRSSRMLPHHQEDHEDLEAMARSIQERYGRRVTDYSEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGQRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRVDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAVIIVKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVTGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKCKIEKKISVQDRFKNTVSSKDVVRIVDGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSNGDRNGDAYSRFSSLRSPHRIPPSPRRFSRGGPPVNSGGRHRGGRGGHDGLAGATVKVRQGPYKGYRGRVIEDKGASVRVELESQMKVVTVDRNHISDNVAVTPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGVHEGPWFMPDILVNVHRAGEESVGIIREVLPDGSYKVALGSSGNGETITAIPNEMEAVVPRKSDKIKIMDGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP* | 1042 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 865 | 884 | - | - | |
| Apr1g0730 | 1041 | SMART | kow_9 | 988 | 1015 | IPR005824 | - | |
| Apr1g0730 | 1041 | SMART | kow_9 | 601 | 628 | IPR005824 | - | |
| Apr1g0730 | 1041 | SMART | kow_9 | 425 | 452 | IPR005824 | - | |
| Apr1g0730 | 1041 | SMART | kow_9 | 477 | 504 | IPR005824 | - | |
| Apr1g0730 | 1041 | SMART | kow_9 | 274 | 301 | IPR005824 | - | |
| Apr1g0730 | 1041 | SMART | kow_9 | 708 | 735 | IPR005824 | - | |
| Apr1g0730 | 1041 | Gene3D | - | 694 | 758 | IPR014722 | - | |
| Apr1g0730 | 1041 | PIRSF | Spt5 | 2 | 1041 | IPR017071 | GO:0006357|GO:0032784 | |
| Apr1g0730 | 1041 | Gene3D | - | 420 | 477 | IPR014722 | - | |
| Apr1g0730 | 1041 | Pfam | KOW motif | 480 | 505 | IPR005824 | - | |
| Apr1g0730 | 1041 | CDD | KOW_Spt5_6 | 982 | 1039 | IPR041980 | - | |
| Apr1g0730 | 1041 | CDD | KOW_Spt5_5 | 710 | 756 | IPR041978 | - | |
| Apr1g0730 | 1041 | Gene3D | - | 165 | 267 | IPR036735 | GO:0006355 | |
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 37 | 55 | - | - | |
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 56 | 73 | - | - | |
| Apr1g0730 | 1041 | Gene3D | - | 274 | 316 | IPR014722 | - | |
| Apr1g0730 | 1041 | Pfam | Early transcription elongation factor of RNA pol II, NGN section | 185 | 266 | IPR005100 | - | |
| Apr1g0730 | 1041 | SUPERFAMILY | Translation proteins SH3-like domain | 469 | 528 | IPR008991 | - | |
| Apr1g0730 | 1041 | PANTHER | TRANSCRIPTION ELONGATION FACTOR SPT5 | 34 | 1039 | - | - | |
| Apr1g0730 | 1041 | CDD | KOW_Spt5_2 | 426 | 476 | IPR041975 | - | |
| Apr1g0730 | 1041 | Coils | Coil | 17 | 37 | - | - | |
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 893 | 907 | - | - | |
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 659 | 712 | - | - | |
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 766 | 912 | - | - | |
| Apr1g0730 | 1041 | SMART | nusgn_4 | 183 | 269 | IPR006645 | GO:0140673 | |
| Apr1g0730 | 1041 | PANTHER | SUPPRESSOR OF TY 5 | 34 | 1039 | IPR039659 | GO:0006357|GO:0032784 | |
| Apr1g0730 | 1041 | CDD | NGN_Euk | 185 | 267 | IPR039385 | - | |
| Apr1g0730 | 1041 | CDD | KOW_Spt5_4 | 605 | 647 | IPR041977 | - | |
| Apr1g0730 | 1041 | Pfam | Spt5 transcription elongation factor, acidic N-terminal | 92 | 179 | IPR022581 | - | |
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 10 | 36 | - | - | |
| Apr1g0730 | 1041 | Gene3D | - | 480 | 529 | IPR014722 | - | |
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 132 | - | - | |
| Apr1g0730 | 1041 | CDD | KOW_Spt5_1 | 278 | 315 | IPR041973 | - | |
| Apr1g0730 | 1041 | MobiDBLite | consensus disorder prediction | 96 | 121 | - | - | |
| Apr1g0730 | 1041 | ProSitePatterns | Ribosomal protein L24 signature. | 429 | 446 | IPR005825 | GO:0003735|GO:0005840|GO:0006412 | |
| Apr1g0730 | 1041 | CDD | KOW_Spt5_3 | 477 | 527 | IPR041976 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr1g0730 | Apr-Chr1 | 8695823 | 8703724 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr1g0730 | K15172 | - | gmx:100801380 | 1795.02 |