Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0727 ATGGGAAAGTGTTGGTTTGTTGGAGTGTTGATTGTGGTGGGCTGTGCCTGCTTTCTAGGCAATGTTGGGGTTGAAGGGTACCCAACTGAGGATATGGTACTGAGGTTGCCTGGTCAACCCAAAGTTGGCTTCAGTCAATATGCTGGCTATGTTGATATAGATGAAAAGCATGGAAGAAGCCTCTTCTACTATTTTGTGGAGGCTGAACAGCACCAAGACAAGAAGCCTCTCACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCCTTCACTGAGTTGGGTCCCTTTTATCCTAAAGGTGATGGACGTGGTCTCCGAAGAAACTTAATGTCTTGGAATAAAGCATCCAACCTTCTCTTTGTGGAATCTCCTGCTGGAGTTGGTTGGTCATACTCAAACACAACTTCAGATTACAACTCTGGAGACGAGTCCACAGCCAATGATATGCTTCTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTACATACCCCAGTTAGCTAGTGCTCTTCTGGACTATAATGCTCATTCAACTGGTTTCAAATTCAATATTAAGGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATCTCCGATGAAATTGGCCTTGCCATCATGAATGATTGCGATTTTGATGATTATGTCTTTGAAACTCCACATAATATGTCTAAATCATGCAACAACGCAATTGATGAAGCAAACGACATTGTTGGGGATTATATAAACAACTACGATGTAATTCTTGATGTTTGTTATCCATCCATAGTTGAACAAGAACTGAGATTGAAAAAAATGGCTACTAAAATAAGTATAGGTGTAGATGTATGTATGAGTTATGAAAGAAGCTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTACATGCAAACCGTACTAATCTTCCATACTCTTGGTCCATGTGTAGTGGTGTTCTAAATTATAGCGACACCGATCCTAACATAAATATCCTTCCAGTTCTCAAAAGGATAGTTCAAAACCATATTCCAGTGTGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTAGATCACTCATTCGTGAACTAGCTCATGAACTGAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGGGGATGGGTAACAGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGGGGAGCTGCCCACATGGTACCATATGCACAACCTTCAAGAGCACTTCATCTTTTCAGTTCATTTGTGCGTGGCAGGAGATTGCCAAACACAACGCACCCTTCAATTGAAGATTAA 1422 0.4219 MGKCWFVGVLIVVGCACFLGNVGVEGYPTEDMVLRLPGQPKVGFSQYAGYVDIDEKHGRSLFYYFVEAEQHQDKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRRNLMSWNKASNLLFVESPAGVGWSYSNTTSDYNSGDESTANDMLLFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLASALLDYNAHSTGFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLAIMNDCDFDDYVFETPHNMSKSCNNAIDEANDIVGDYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMSYERSFYFNLPEVQKALHANRTNLPYSWSMCSGVLNYSDTDPNINILPVLKRIVQNHIPVWVFSGDQDSVVPLLGSRSLIRELAHELKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVRGRRLPNTTHPSIED* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0727 473 Gene3D - 314 350 - -
Apr1g0727 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 467 IPR001563 GO:0004185|GO:0006508
Apr1g0727 473 SUPERFAMILY alpha/beta-Hydrolases 25 467 IPR029058 -
Apr1g0727 473 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Apr1g0727 473 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Apr1g0727 473 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Apr1g0727 473 Pfam Serine carboxypeptidase 38 460 IPR001563 GO:0004185|GO:0006508
Apr1g0727 473 Gene3D - 361 460 - -
Apr1g0727 473 PANTHER CARBOXYPEPTIDASE 6 467 - -
Apr1g0727 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Apr1g0727 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Apr1g0727 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Apr1g0727 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0727 Apr-Chr1 8670794 8674302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0727 321 463 Calmodulin-binding Proteins AT2G22960 25.874 8.27e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0727 K16297 - gmx:100815723 902.894