Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0725 ATGATGCTCACATCCTCGGTGCGTGACTACATCAACCGCATCTTGCAGGACATCTCTGGCATGAAGGTTCTCATCCTTGATTCTCAAACGGTAAGTATTGTGAGTGTTGTGTATTCACAGTCAGAGCTTCTTCAGAAAGAAGTGTTTTTGGTAGAGTTGATAGATTCCATTTCCAAGTCAAATGAATCAATGTCGCATCTCAAGGCCATTTACTTCCTTCGACCTACATCAGAGAATATCCAGTTTTTGCGCCGCCAGCTTTCTAGTCCCAGATTTGGAGAGTATCACTTATTTTTCTCCAACATATTGAAGGACACTCAGATTCATTTACTTGCTGATTCAGATGAACAGGAAATTGTCCAGCAAGTTCAGGAGTTCTATGCAGATTTTGTTGCAATTGATCCTTATCATTTCACTTTGCATGTGCCTACAAGTTATATATATATGCTCCCAGCTATGGTAGATCCTTCAGCATTGCAGCGGTTCTGTGACCGGGTTGTTGATGGTCTTGCAGCTGTTTTTTTGGCATTAAAAAGAAGACCAGTTATTAGATATCAAAGGACATCTGATATTGCAAAAAGGATAGCACAAGAAGCATCTAAACTGATGTACCAAGAGGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTTTCTCCATTGTTGTTGGTGATTGACAGGAGGGATGATCCTGTAACCCCATTGCTAAACCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAAGTGGACTTGAAAGCCATTGGTAAATTTCCGAAGGATCAGGAGGAGGTTGTGTTGTCATCTGAGCAAGATTCCTTTTTCAAAGCTAACATGTATGAGAATTTTGGAGATATAGGTATGAATATCAAGCGGATGGTTGATGAATTTCAGCAAGTGGCAAAGAGTAACCAGAACATCCAAACAATTGAGGACATGGCCAAATTTGTTGATAATTACCCTGAGTACAGAAAAATGCATGGAAATGTGACAAAACATGTGACTTTAGTAACTGAAATGAGCAAGATAGTTGGAGAGCGAAAACTTATGTTAGTTTCACAAACAGAACAGGAATTGGCTTGCAATGGAGGGCAAGGGGCTGCTTTTGAGGCAGTGACAAATCTACTAAACAATGAAAGCATATCAGATGTGGACCAACTACGTTTGGTCATGCTGTATGCTTTACGATATGAGAAAGATAGCCCAGTTCAATTAATGCAGCTCTTCAACAAACTGGCTTCCAGATCTGCCAAGTACAAACCTGGGCAAGCAGGTGTTGACAAGAGAACTGGTGATCTTTTTGGAAATCGAGATCTAATGAATATTGCCCGTAACATGGCTCGTGGTTTGAAGGGTGTTGAGAATGTTTACACCCAACACCAGCCACTTCTGTTCCAAGTCATGGAAAGCATTGTCAAAGGGCGGTTGAGAGATGTGGACTACCCATTTGTTGGAAATCACTTTCAACAGGGAAGGCCACAGGAAGTGATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCACGGTCTGTTGCTTTACAAAATGCCAGCAATACTGGCATTCGTTTTATACTCGGCGGCTCTTCTGTTCTTAATTCTAAAAGGTTTTTAAGGGACTTAGAAGAAGCCCAAAGGGTAGCTCGTTCTAGCACCACCGTTGTTTGA 1686 0.4128 MMLTSSVRDYINRILQDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELIDSISKSNESMSHLKAIYFLRPTSENIQFLRRQLSSPRFGEYHLFFSNILKDTQIHLLADSDEQEIVQQVQEFYADFVAIDPYHFTLHVPTSYIYMLPAMVDPSALQRFCDRVVDGLAAVFLALKRRPVIRYQRTSDIAKRIAQEASKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLKAIGKFPKDQEEVVLSSEQDSFFKANMYENFGDIGMNIKRMVDEFQQVAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVGERKLMLVSQTEQELACNGGQGAAFEAVTNLLNNESISDVDQLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGQAGVDKRTGDLFGNRDLMNIARNMARGLKGVENVYTQHQPLLFQVMESIVKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTTYEESRSVALQNASNTGIRFILGGSSVLNSKRFLRDLEEAQRVARSSTTVV* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0725 561 Pfam Sec1 family 22 546 IPR001619 GO:0016192
Apr1g0725 561 PIRSF VPS45_Sec1 1 558 IPR001619 GO:0016192
Apr1g0725 561 Gene3D - 2 128 IPR043154 -
Apr1g0725 561 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 548 IPR001619 GO:0016192
Apr1g0725 561 Gene3D - 138 548 IPR027482 -
Apr1g0725 561 Gene3D - 353 467 - -
Apr1g0725 561 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 352 IPR043127 -
Apr1g0725 561 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 548 - -
Apr1g0725 561 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 549 IPR036045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0725 Apr-Chr1 8649753 8661484 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0725 K12479 - gmx:100782786 1050.81