Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0720 ATGATACTGCTGAAGATGCTGTTTCAAGCTGTCCTGTACTCGGGAACACTGGCTGGGCACTATCCAAGGAACACTCCAGTGAAGTTTAGAGCGGACTCCGGATTACAGGATGGGGATTCAGCTAAGGCTAACCTTACTGGTGGATTCTATGATTCTGGCAACAACATTAAGTTTACCTTCACCACAGCTTATACGATGACCTTGTTGAGTTGGACTGTGATGGAATATCAAAGTAAATATGCTGATATTGGTGAGCTTGATCATGTCAAGGACATCATCAGATGGGGTAGTGACTACATGCTCAAGGTGTTCATTCCCCCTAATTCAACAGCTGGATCCAACCTTACACTGTATTCCCAGGTTGGAAGTACCATTAGTAATAACAATGAGCCTAATGATATAAGTTGCTGGCAACGACCTGAAGACATGAAGTATGAGAGACTCGTTTCAATTTGTGATGGCTCTGCTTCAGATTTAGCTGGTGAAATAGTGGCAGCATTATCTGCAGCATCAATGGTATTCATAGAAGATAAAGATTACTCAGGGAGACTAGTCCAAGCAGCAGAAAGAGTCTACGAGGCTATCACAAAGGAAGATCCTACAAAACAAGGGACCTACTCCATGGTTGATGCATGTGGGAAACAAGCAAGAATGCTTTATAACTCAACTAGTTACAAAGATGAGTTGGCTTGGGGAGCAACTTGGTTATTTCTTGCTACTAAAAAGGCTGATTACCTTGCAATTGCAACTGCAATGTTTATATCAGCCAAGAGTGATGAATCAAGCTTTGACAAAGGGATCCTTTATTGGAATAACAAGCTTAATGCTGTTGAGGTTTTGCTTACTGGTATTCGATATTTCCATGATCCTGGCTTCCCACATGAGGATGTCTTGAAACTCTCATCCAACTCTACAGATTCCCTCATGTGTTCTTATCTGTTCAACAAATACTTTAGCAGGACACATGGTGGACTAATTATCCTGAAACCTGATAATGAGCCATTACTCCAGTATGCTGCAACAGCATCTTTTCTCAGTAAATTGTACAGTGATTACCTTGATCATCTCAAAATATCTGGTGCAAGTTGCAAGACTGATGAATTCTCGGTGGCAAAGCTTCGTGATTTCGCTACTTCTCAGGTTAAGTACATCTTAGGACAAAACCCTATGAAAGTGAGCTATTTAGTGGGGTATGGTGACAAGTTTCCTGTCCAGGTTCATCACAGAAGTGCATCAATCCCTTGGGATAACCGGCATTACTCTTGTGATGATGGTAAGGGGTGGCTAAACTCTAAAGAACCAAATCCACAAGTGCTTTTGGGAGCCATGGTGGGAGGGCCAGACACTAATGATAATTTCATCGATCAAAGAACCAACCAACGGTTCACTGAGCCAAACATAGCAAGCAATGCTGGCTTAGTTGCAGCTCTGATAGCACTTCAGGATCCTCCTTATAAGTCACATAACATCAAAAACTCGTTGTGGGGATGGACCTGA 1497 0.4228 MILLKMLFQAVLYSGTLAGHYPRNTPVKFRADSGLQDGDSAKANLTGGFYDSGNNIKFTFTTAYTMTLLSWTVMEYQSKYADIGELDHVKDIIRWGSDYMLKVFIPPNSTAGSNLTLYSQVGSTISNNNEPNDISCWQRPEDMKYERLVSICDGSASDLAGEIVAALSAASMVFIEDKDYSGRLVQAAERVYEAITKEDPTKQGTYSMVDACGKQARMLYNSTSYKDELAWGATWLFLATKKADYLAIATAMFISAKSDESSFDKGILYWNNKLNAVEVLLTGIRYFHDPGFPHEDVLKLSSNSTDSLMCSYLFNKYFSRTHGGLIILKPDNEPLLQYAATASFLSKLYSDYLDHLKISGASCKTDEFSVAKLRDFATSQVKYILGQNPMKVSYLVGYGDKFPVQVHHRSASIPWDNRHYSCDDGKGWLNSKEPNPQVLLGAMVGGPDTNDNFIDQRTNQRFTEPNIASNAGLVAALIALQDPPYKSHNIKNSLWGWT* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0720 498 SUPERFAMILY Six-hairpin glycosidases 16 483 IPR008928 GO:0005975
Apr1g0720 498 PANTHER ENDO-1,4-BETA-GLUCANASE 7 492 - -
Apr1g0720 498 Pfam Glycosyl hydrolase family 9 17 477 IPR001701 GO:0004553|GO:0005975
Apr1g0720 498 Gene3D - 6 483 IPR012341 GO:0005975
Apr1g0720 498 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 383 409 IPR018221 -
Apr1g0720 498 PANTHER ENDOGLUCANASE 7 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0720 Apr-Chr1 8585637 8591332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0720 12 480 Glycoside Hydrolase AT5G49720 47.182 1.00e-131 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0720 K01179 - gmx:100805472 865.529