Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0709 ATGGCTTCCAAGCGGATCTTGAAGGAACTCAAGGATCTCCAGAAGGATCCTCCTACCTCTTGCAGCGCCGGTCCTGTTGCTGAAGACATGTTTCACTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTAGTTACTATTCATTTCCCTCCGGATTATCCCTTCAAGCCACCCAAGGTTGCATTCAGGACGAAGGTATTTCACCCAAATATAAATAGCAATGGAAGTATTTGCCTTGACATATTGAAGGAGCAATGGAGCCCTGCACTAACTATTTCTAAGGTGTTGCTCTCAATTTGTTCCCTGTTGACGGACCCTAATCCTGATGATCCTTTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGACCAAGTACGAGTCAACCGCCAGAAGCTGGACCCAGAAATATGCCATGGGTTAA 447 0.472 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYESTARSWTQKYAMG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0709 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Apr1g0709 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Apr1g0709 148 SMART ubc_7 4 147 - -
Apr1g0709 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Apr1g0709 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Apr1g0709 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Apr1g0709 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Apr1g0709 148 CDD UBCc 3 142 IPR000608 -
Apr1g0709 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0709 Apr-Chr1 8497859 8501016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0709 2 114 Miscellaneous Gene Families AT3G17000 36.975 1.02e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0709 K06689 - sspl:121783175 312.383