Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0704 ATGGGAGTTATGACTGTTTCTAGTTCAGTTGCTAGGACTCCATTGGGATTGAATACAAAGTTTTCAGGTCATCATTTTGGACTGAAGAGACCTTTAACTGTGGCATTTAAAGGGGATAAACAAAATGACACATCTTTGGTTGCAACTCAAGAGAAAATTCCAATGCACGTTGAAACGGCGAAGGCGCAGAAGAAAAGGAATGGAAAAACTAACAAGATACCAAAGAGAGAGAGAGTTCTCTTTGCTGAGGAAAGTTCTCCATCTTCCTTGGATGTGGACTACAATGAAGCTGCTGCTATACTTGAAAATATATACAAACTCAGTCCTGCATCTGATACATGTAATAAAGAATGTATAGATGGTAAAATCAGAAGAGTCTCTAGGAGGGGGAAGAAGATTGGTGATGAGAGTAAAGGAAAGGAGGAGTTCAGCAATGATAGGGTGGTTAGAAACCAGAACACCAAAGCCAAACGATTGAACCTTGATGAGAGGATTGCATTGAAAATGAAAAAAATTGAGGATGAAGTCATTCCAACTCGAAAGAGACGAAATGTTAGGAATAGAATTGAGAAGATTGAGGAACTTGTTAGGGAATATTCTGTGTCAATTGATTTTGTCAGTTTGGACTGGAAAAAAATGAGAATACCTCCAGTTCTTTCTTCTTCAGAGCATGCTTGGTTATTCAAATTGATGCAACCAATGAAGGTGAAAGAAGATTTACAGAAGGAGCTAGCTAGAGAACCTACAGATGGTGAACTAGCTGATGCAACAAACATGAGCAATGCTCAAGTAAAGAAAGTAATAGAGGTTGGTCATGCTGCAAGAAATAAACTCATAAAGCACAATCTCCGCCTTGTCTTGTTCGTGATCAACAAATATTTTTCAGATTTTGCTAGTGGCTCTAGGTTTCAAGATCTTTGTCAAGCAGGAGTTAAGGGACTTATAACAGCAGTTGATCGCTTTGAGCCAAATAGGAGATTTCGGCTATCAACATATGGTTTGTTTTGGATAAGACATGCTATCATTCGTTCGATGACTCTCTCAAACTTCACCCGTATTCCTTTTGGACTGGAATCAGTTAGAGCAGAGATCCAAAGAGCTAAAACTGAGTTGGCATTTGAGCTTCAGAGGTCACCAACAGAGGAAGAGATAATAGCAAGAGTGAGTATATCACCTGAAAGATACCGTGATGTATTGAAGGCATCAAAGCCCATTCTTTCGCTAAACTCAAGACATATAACCACACAAGAGGAATTCATTAATGGGGTTGTTGATGATGGTGGTGTTGATGGTGATAATAAGAGGCAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCGAAGGAGAACTTGGTGATCAGACAGAGATTTGGACTTGATGGGAAGGGTGACAGAACGTTGGGAGAAATCGCAGGGAACTTGAACATATCTAGGGAAATGGTAAGAAAGCACGAAATCAAAGCTCTAATGAAGCTCAAACATTCGGCTCGATTGGATTATCTTCGTCGTTATGTTGTATAA 1539 0.3977 MGVMTVSSSVARTPLGLNTKFSGHHFGLKRPLTVAFKGDKQNDTSLVATQEKIPMHVETAKAQKKRNGKTNKIPKRERVLFAEESSPSSLDVDYNEAAAILENIYKLSPASDTCNKECIDGKIRRVSRRGKKIGDESKGKEEFSNDRVVRNQNTKAKRLNLDERIALKMKKIEDEVIPTRKRRNVRNRIEKIEELVREYSVSIDFVSLDWKKMRIPPVLSSSEHAWLFKLMQPMKVKEDLQKELAREPTDGELADATNMSNAQVKKVIEVGHAARNKLIKHNLRLVLFVINKYFSDFASGSRFQDLCQAGVKGLITAVDRFEPNRRFRLSTYGLFWIRHAIIRSMTLSNFTRIPFGLESVRAEIQRAKTELAFELQRSPTEEEIIARVSISPERYRDVLKASKPILSLNSRHITTQEEFINGVVDDGGVDGDNKRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEIKALMKLKHSARLDYLRRYVV* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0704 512 Coils Coil 182 202 - -
Apr1g0704 512 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 353 419 IPR013324 -
Apr1g0704 512 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 201 345 IPR013325 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 274 500 IPR014284 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 Gene3D - 435 512 IPR036388 -
Apr1g0704 512 PRINTS Major sigma-70 factor signature 305 318 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 PRINTS Major sigma-70 factor signature 329 337 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 PRINTS Major sigma-70 factor signature 451 463 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 PRINTS Major sigma-70 factor signature 472 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 PRINTS Major sigma-70 factor signature 487 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 512 - -
Apr1g0704 512 Pfam Sigma-70, region 4 447 500 IPR007630 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 438 510 IPR013324 -
Apr1g0704 512 Coils Coil 357 377 - -
Apr1g0704 512 Gene3D - 269 346 - -
Apr1g0704 512 Pfam Sigma-70 region 3 363 429 IPR007624 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 Pfam Sigma-70 region 3 235 271 IPR007624 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 512 - -
Apr1g0704 512 Pfam Sigma-70 region 2 278 344 IPR007627 GO:0003700|GO:0006352|GO:0006355
Apr1g0704 512 Gene3D - 230 268 IPR036388 -
Apr1g0704 512 Gene3D - 351 403 IPR036388 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0704 K03093 - gmx:100812580 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0704 1 8406846 8410458 Apr1g0704 1 8406846 8410458 ECH