Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0692 ATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCAGAAGATTATGGATGGGAAGGCGAGTAACGGAAATGGTGTAGAGAAGGAAATTCCTTCTTGTTGTTTGAAGGCTAAGGCTTCAGCCCCTGAGTTGGAGGCGAAGTGTCATTCCACTGTTGTTTCTGGGTGGTTCTCAGTATCTCAAACTTGCTCTGGGAAGTCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCACATTCAATCAAAGTAGATGAGATCTTATACAAGGAAAGGTCAGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAACATATGGCAAAGTGCTTGTGCTTGATGGGATTGTTCAGTTGACTGAGAAGGATGAATGTGCTTATCAGGAGATGATTGCTCATCTTCCCCTCTGTTCAATTCTGTCCCCCAAAAATGTGTTAGTTGTTGGTGGTGGAGATGGTGGAGTTCTAAGGGAAGTATCCCGTCACAGCTCTGTGGAATGTATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGGAGTTTTTTCCGGAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTACACCTGCACGTTGGTGATGCTGTTGACTTTCTTAGACATGCTCCAGAAGGGAAATATGATGCCATAATTGTTGATTCCTCAGATCCTGTGGGTCCTGCGCAAGAACTTGTTGAGAAGCCTTTCTTTGAGACAATAGCTAAGGCATTAAGGCCTGGCGGAGTTCTCTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTGTCCAAGATATGATCTCTGTTTGTCGAGAAACATTCAAAGGTTCTGTACACTATGCATGGGCAAGTGTACCAACTTATCCAAGTGGTGTGATAGGTTTTCTTCTATGCTCAACAGAAGGACCACCTGTTGATTTTGTAAACCCAATCAACCCCATTGAAAAGTTGGAAGGTGCTAGTGAGCACAGAAGAGAACTTCGATTCTATAACTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCCGCGTTTCTGAAGAGGGAAGTGAGCCTGCTCCGTGATTACTCCATTAAGTAG 1089 0.4417 MEDGAGRGLECQKIMDGKASNGNGVEKEIPSCCLKAKASAPELEAKCHSTVVSGWFSVSQTCSGKSGKAVYFNNPMWPGEAHSIKVDEILYKERSEYQEVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSILSPKNVLVVGGGDGGVLREVSRHSSVECIDICEIDKMVIDVSREFFPELAVGFEDSRVHLHVGDAVDFLRHAPEGKYDAIIVDSSDPVGPAQELVEKPFFETIAKALRPGGVLCNMAESMWLHTHLVQDMISVCRETFKGSVHYAWASVPTYPSGVIGFLLCSTEGPPVDFVNPINPIEKLEGASEHRRELRFYNSEMHSAAFALPAFLKREVSLLRDYSIK* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0692 362 Gene3D Vaccinia Virus protein VP39 120 355 IPR029063 -
Apr1g0692 362 TIGRFAM speE: spermidine synthase 79 348 IPR001045 GO:0003824
Apr1g0692 362 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Apr1g0692 362 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
Apr1g0692 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 352 IPR029063 -
Apr1g0692 362 CDD AdoMet_MTases 169 253 - -
Apr1g0692 362 Hamap Polyamine aminopropyltransferase [speE]. 54 354 IPR001045 GO:0003824
Apr1g0692 362 PIRSF Spermidine_synth 42 357 IPR030668 GO:0006595
Apr1g0692 362 PANTHER SPERMINE SYNTHASE 1 359 - -
Apr1g0692 362 Pfam Spermine/spermidine synthase domain 125 310 - -
Apr1g0692 362 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
Apr1g0692 362 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 304 IPR030374 -
Apr1g0692 362 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 359 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0692 Apr-Chr1 8230465 8235687 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0692 K00797 - gmx:100815244 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0692 1 8230465 8235687 Apr1g0692 1 8230465 8235687 ECH