Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0667 ATGGGCTGCTACTTTTCGACTTCAAAGAAAATCCAAACACCAGATTATGAGGAACCAACCGTTCTTGCTTCCGTGACACCTTGTGAGTATACGTCATCAAGTGTTACTGTTAGTGAAGTAGAGGCCTTGCATGAACTCTATAAGAAGATAAGCAATTCAGTTATTGAAGATGGTCTTATTCACCGGGAAGAATTCCAGCTGGCACTTTTCCAGAACAAAAATAAGAGAAATCTGTTTGCAGACAGGATTTTTGACTTATTTGATCTCAAGCGCAATGGGGTCATTGAGTTCGGGGAATTCGTTCGATCGTTGGGTGTTTTTCACCCAAATGCAGCTTTAGAAGAAAAAATGAATTTTGCTTTTAAGTTATATGATCTGAGGCAGACAGGGTGCATTGAACGAGAGGAGTTGAAGGAGATGGTATTGGCACTTTTGCACGAGTCAGATCTTGTACTTTCAGATGATATGATTGAAACCATTGTGGAAAAGACTTTTAGTGATGCTGATATAAATGGTGATGGAAGGATTGATCAAGATGAGTGGAAAGAATTTGTGTCCAAGCATCCATCCTTGATAAAGAACATGACCCTGCCCTATCTCAAGGATATTACCTTGGCATTTCCCAGTTTTGTCGCAAGAACAGAAGTCGAAGACATAGAGGTTTGA 666 0.4009 MGCYFSTSKKIQTPDYEEPTVLASVTPCEYTSSSVTVSEVEALHELYKKISNSVIEDGLIHREEFQLALFQNKNKRNLFADRIFDLFDLKRNGVIEFGEFVRSLGVFHPNAALEEKMNFAFKLYDLRQTGCIEREELKEMVLALLHESDLVLSDDMIETIVEKTFSDADINGDGRIDQDEWKEFVSKHPSLIKNMTLPYLKDITLAFPSFVARTEVEDIEV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0667 221 ProSitePatterns EF-hand calcium-binding domain. 169 181 IPR018247 -
Apr1g0667 221 PRINTS Recoverin family signature 83 104 - -
Apr1g0667 221 PRINTS Recoverin family signature 130 148 - -
Apr1g0667 221 PRINTS Recoverin family signature 176 196 - -
Apr1g0667 221 CDD EFh 119 186 IPR002048 GO:0005509
Apr1g0667 221 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 220 - -
Apr1g0667 221 SUPERFAMILY EF-hand 34 209 IPR011992 -
Apr1g0667 221 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Apr1g0667 221 PANTHER CALCINEURIN B 1 220 IPR045198 GO:0005509|GO:0019722|GO:0019900
Apr1g0667 221 Pfam EF-hand domain pair 114 185 IPR002048 GO:0005509
Apr1g0667 221 SMART efh_1 160 188 IPR002048 GO:0005509
Apr1g0667 221 SMART efh_1 116 144 IPR002048 GO:0005509
Apr1g0667 221 SMART efh_1 79 107 IPR002048 GO:0005509
Apr1g0667 221 Gene3D - 31 219 - -
Apr1g0667 221 Pfam EF-hand domain pair 56 102 IPR002048 GO:0005509
Apr1g0667 221 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
Apr1g0667 221 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0667 Apr-Chr1 7950093 7955453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0667 35 221 EF-hand Containing Proteins AT5G24270 74.866 1.01e-101 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0667 K06268 - gmx:100777818 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0667 1 7950093 7955453 Apr1g0667 1 7950093 7955453 ECH