Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr1g0652 | ATGGAAAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGATTCTGAGACCTTGGCTAAGACAAGGCCACGCTATAACCACCACTACAGCACCAGCGCTCATCGCCATCGCGGCGGCGCTGGCGGCGGCGGTGGAGGTGGTGGCCGTCATCCTAAGGCGCAGGACTCGCCGTTAACGGTAACCACAAGTTACCGCATTCTGTGCCACGACATGAAGGCCGGGGGCGTGATTGGCAAGTCCGGCAGCATTATAAAGTCTATAAGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTTATACCGGGAGATGAGGAGCGAATCATCGAGATTTCCGACACACGCCGCCGCGACCCTGAGGGGAGAATGCCGTCGTTCTCGCCGGCGCAGGAGGCTCTGCTGCTGATCCACGAGAGGATTCTTGAGAGCGATGCGGCGTTTGGGGTGGCGGAGGAGGAAGAGGAGTACGTCGGCGGTGGAAGAGGAGGAGGAGGCGGCGGCAGTGGGAGCAACCGCGTGGCGACAAGGTTGGTGGTGTCAAGAGTGCATGTTGGGTGTTTGTTGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGATACGAAGACACAAATTAGGATACTCCCTAGAGATCTCAACCTTCCCCGTTGTGTTTCCATGTCTGAAGAGATTGTACAGGTTGTAGGTGATGTAAATGCTGTGAAGAATGCTCTAGTAATTATATCATCACGATTGAGGGAGAGCCAGCACCGTGACCGCAGTCATTTTCATGGACGTGTACATTCGCCAGAGCGTTTTTTCTCTCCTGACGATGATTATATTCCTCATGTGACTAGTGGATCTCGTAGATCATCTATGGATGGGGCTGCTTTTGGATCACGAGTATCTACCACAAATACCAGGAACAATAACCACCCAACATTAGGTTATGCAATGGAGCCTGGGGCTGCTCCTGTTACTGATGATGCACAGCCCTTCTATGGGGAGGAACTTGTTTTCCGTTTACTTTGTCCAGTTGAGAAAGTTGATCGTGTTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTCAGAATGAAGTTGGCGTCGATGTAAAGGTCATTGATCCTGTTGGTGGTTCAGATGAACAGATAATTATGATTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGTTACATATACAAAGTCGCATTGTCGATCTTGTTCCAGATAAAGACAATGATATAACCACCAGGCTTGTTGTCCCATCTAGTGATATTGAATGCTTGGATGGAAAAGATGCTTCACTATTGGAAATAAGGAGGTTGACTGGTGCTAATGTTCAAATTTTGCCTAGAGAAGAACTACCTCTTTGTGTTGCAAAAGCTGATGAACTGATACAGATTGTGGGAGAGATCAAAGCAGCCCGAGATGCTGTTGTTGAGGTGACATCAAGACTAAGAAGTTATTTGTATAGGGATTTCTTTCAAAGGGAGACAGTAGCACCAGCAGCTCTCTTACCTGGTGTGGAGGCATCTTCTTCCAATAATATAGCTCCAGTTACTGAAACTTCCACAACCTATGAGAATATGCAGACTGTGGGGGCAACCCTTCCGTTGAAGGAAACTGGAGGATCAAGCATTGAGACAGGAAAACAGAAAGAAAGTGATCGCCGTGATGAGATGCCTAGCGCTTTAAATAGGATTGCTGTGCCTCTTGTCACAAGGAGTACACTTGAAGTTGTTATACCAGAGTATGCCGTACCAAAGCTTATAGCAAAATCCAAAAGCAAGCTTGCACAGATAAGTGAGTTATCAGGAGCCAATGTAACCCTTGTAGAGGATAGACCAGACGTAACGCAGAAGATTATTCAGATATCTGGTACTCCAGAGCAGGCAGAAAGGGCCCAGAGCTTGCTCCAGGGATTTATTTTGAGCACACAAGAAGACGGCCCTTAA | 1968 | 0.4802 | MERSRSKRNYYYDQDYDSETLAKTRPRYNHHYSTSAHRHRGGAGGGGGGGGRHPKAQDSPLTVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGVAEEEEEYVGGGRGGGGGGSGSNRVATRLVVSRVHVGCLLGKGGKIIEQMRMDTKTQIRILPRDLNLPRCVSMSEEIVQVVGDVNAVKNALVIISSRLRESQHRDRSHFHGRVHSPERFFSPDDDYIPHVTSGSRRSSMDGAAFGSRVSTTNTRNNNHPTLGYAMEPGAAPVTDDAQPFYGEELVFRLLCPVEKVDRVIGESDGIVEFLQNEVGVDVKVIDPVGGSDEQIIMITSEEGPDDELFPAQEALLHIQSRIVDLVPDKDNDITTRLVVPSSDIECLDGKDASLLEIRRLTGANVQILPREELPLCVAKADELIQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRETVAPAALLPGVEASSSNNIAPVTETSTTYENMQTVGATLPLKETGGSSIETGKQKESDRRDEMPSALNRIAVPLVTRSTLEVVIPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP* | 656 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr1g0652 | 655 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 170 | 256 | IPR036612 | GO:0003723 | |
| Apr1g0652 | 655 | ProSiteProfiles | Type-1 KH domain profile. | 64 | 136 | - | - | |
| Apr1g0652 | 655 | SMART | kh_6 | 578 | 648 | IPR004087 | GO:0003676 | |
| Apr1g0652 | 655 | SMART | kh_6 | 63 | 144 | IPR004087 | GO:0003676 | |
| Apr1g0652 | 655 | SMART | kh_6 | 333 | 406 | IPR004087 | GO:0003676 | |
| Apr1g0652 | 655 | SMART | kh_6 | 174 | 250 | IPR004087 | GO:0003676 | |
| Apr1g0652 | 655 | SMART | kh_6 | 417 | 491 | IPR004087 | GO:0003676 | |
| Apr1g0652 | 655 | Gene3D | K Homology domain, type 1 | 578 | 650 | IPR036612 | GO:0003723 | |
| Apr1g0652 | 655 | ProSiteProfiles | Type-1 KH domain profile. | 334 | 401 | - | - | |
| Apr1g0652 | 655 | MobiDBLite | consensus disorder prediction | 543 | 565 | - | - | |
| Apr1g0652 | 655 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 62 | 115 | IPR036612 | GO:0003723 | |
| Apr1g0652 | 655 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 572 | 649 | IPR036612 | GO:0003723 | |
| Apr1g0652 | 655 | MobiDBLite | consensus disorder prediction | 282 | 308 | - | - | |
| Apr1g0652 | 655 | Gene3D | K Homology domain, type 1 | 63 | 146 | IPR036612 | GO:0003723 | |
| Apr1g0652 | 655 | ProSiteProfiles | Type-1 KH domain profile. | 175 | 245 | - | - | |
| Apr1g0652 | 655 | ProSiteProfiles | Type-1 KH domain profile. | 579 | 643 | - | - | |
| Apr1g0652 | 655 | Pfam | KH domain | 67 | 115 | IPR004088 | GO:0003723 | |
| Apr1g0652 | 655 | Pfam | KH domain | 581 | 644 | IPR004088 | GO:0003723 | |
| Apr1g0652 | 655 | Pfam | KH domain | 178 | 246 | IPR004088 | GO:0003723 | |
| Apr1g0652 | 655 | PANTHER | RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 | 3 | 547 | - | - | |
| Apr1g0652 | 655 | CDD | KH-I | 581 | 644 | - | - | |
| Apr1g0652 | 655 | MobiDBLite | consensus disorder prediction | 32 | 59 | - | - | |
| Apr1g0652 | 655 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 411 | 499 | IPR036612 | GO:0003723 | |
| Apr1g0652 | 655 | CDD | PCBP_like_KH | 66 | 140 | - | - | |
| Apr1g0652 | 655 | CDD | PCBP_like_KH | 179 | 246 | - | - | |
| Apr1g0652 | 655 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 327 | 394 | IPR036612 | GO:0003723 | |
| Apr1g0652 | 655 | Gene3D | - | 333 | 494 | - | - | |
| Apr1g0652 | 655 | Gene3D | K Homology domain, type 1 | 172 | 254 | IPR036612 | GO:0003723 | |
| Apr1g0652 | 655 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 3 | 547 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr1g0652 | Apr-Chr1 | 7813264 | 7818539 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr1g0652 | K21444 | - | gmx:100804167 | 1078.54 |
Event-related genes