Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0641 ATGTCCGACGCTTATTGGAGATACCCCGAATCACGCCACGCCCCTTCTTCCGTCGCCGGCAAGCGCTCTCGTTCCGATTACGATGTCTCTGGCGTTCATGACTTGCCCAGTTACTTTCCCCAAGATGACGATAGAGCAGGGCTACGCGCAATTAGAGATACTGAATCCCTTGATGCATCCTATGAGCGTTACCTACGTAGTGCGCAAGTTTCGTCTTATGGTGCGGGACAGTCTACTAGAACCATTGGTGGGCGAATTCCCAGTCATGCTATTGATGATTCACATGTCACAAGCATTGGGGGTATAGACAGGGGAACAAATCCAAAAGACAAAATCTTGGGATTAAGTAGTGGAAGGGCGGACCTTTCTCTTCCACCTGATGCTACCAGTACACTGTTTGTGGAGGGTTTACCTTCCAACTGTACAAGACGGGAAGTAGCTCATATTTTTCGTCCTTTGGTTGGATACAAAGAAGTCAGACTTGTCAGCAAGGAATCGAGACAACCTGGAGGTGATCCACTGGTACTTTGTTTTGTCGATTTTATGAGTCCAGCTCATGCAGCAAGTGCAATGGATGCATTACAGGATTAG 591 0.4788 MSDAYWRYPESRHAPSSVAGKRSRSDYDVSGVHDLPSYFPQDDDRAGLRAIRDTESLDASYERYLRSAQVSSYGAGQSTRTIGGRIPSHAIDDSHVTSIGGIDRGTNPKDKILGLSSGRADLSLPPDATSTLFVEGLPSNCTRREVAHIFRPLVGYKEVRLVSKESRQPGGDPLVLCFVDFMSPAHAASAMDALQD* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0641 196 CDD RRM_RBPMS_like 130 196 - -
Apr1g0641 196 SUPERFAMILY RNA-binding domain, RBD 124 195 IPR035979 GO:0003676
Apr1g0641 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 195 IPR000504 GO:0003723
Apr1g0641 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 196 IPR000504 GO:0003723
Apr1g0641 196 MobiDBLite consensus disorder prediction 1 27 - -
Apr1g0641 196 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 14 195 - -
Apr1g0641 196 Gene3D - 126 196 IPR012677 -
Apr1g0641 196 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 14 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0641 Apr-Chr1 7707602 7713684 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0641 - - gmx:100786188 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0641 1 7707602 7713684 Apr1g0641 1 7707602 7713684 ECH