Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0628 ATGGTTGTATTCATTCACTCGAACAACGACACTCTCTTCATCTCCGGCGCCGGCGGCGCCAGGTTCTCTGCTATGGCCGCGGCGGCGTCGGCGTCCACTCCGGCGGTGCTCTTCACTGCCTTGGCTGGCCTCGCTATCGTCGCCGTCATCTTCTACGGTGTCAGTAGGGGTCGACTTAAATCCCCATGGTCACGCAGGAAAAGAAAACGTGTCCTTTCACCTCAGCAGTGGAAGAGCCTGTTTACCCAAGATGGGAGAATTCGTGATGGTGGAATTAAATTCCTTAAAATAATTCGCAGTGGAGGTGTTGATCCTAGTATTAGGGTTGAAGCTTGGCCATTCCTACTCGGAGTCTATGAGTTGGACAGTACCAAAGAAGAAAGAGAAGCTATAAGAGCCCAAAATAGAAAGGAGTATGAGAAGCTTCGCAGACAATGCCAGCAACTGCTAAAGCAGAGTAATGGGAGCTTTAAGTTAAATGAAATAGGTGAAATCAGCTATGAAGGAGATGGCGGAAGTCTTGTTCAAGATTATGGTTCTCCAAGTTTAGAAGATGCAACAAGTGCCAGAGAATCGCTTTCCAGTGAGGAACGAAGCCTGGATATTGAGTATTCAGATGATCCATCGGGTGCCCTGTTGGAAGGAGATGATGCTCCAAACACTAGCAATGCTGATTCCTCTGTGCCAGATACTGATTCCACTGATTCAGACTCCTCGGAAGGTCCTGAGGTAATTCAAACATTTCCTTCTGATGATGGTCAGGAAGAGAACAATTCAAAGGAAAATGTTTCTTCCTCCCAAATGAAAGTCCCATCAAAACTATGGAGTAATGAAGATTTTGCCACATGGCAACGAATCATTCGACTTGATGCAGTACGTGCCAATGCAGAATGGATGCCATACTCCCCTTCTCAGGCTGTTGTAGCAGACAGTAGGGCACATCATTCTGCCGAGGCTGTTGGCTTGAAGGATTATGGTCACCTAGACTCTGCCAGAATCTTTCATTCTGCTCGACTAGTTGCTATTCTCGAAGCATATGCTCTATATGACCCTGAAATTGGCTACTGCCAGGGTATGAGTGATCTTCTATCTCCTATAGTTAGTGTTATATCAGAAGATCACGAGGCTTTCTGGTGTTTTGTTGCATTCATGAAGAAGGCTCGGCAGAATTTCAGGCTTGATGAGGTGGGTATTAGGAGGCAACTTGATATAGTAGCAAAAATTATCAAGTTTAAGGATGCCCACCTGTTCAGGCATTTGCAGAAGCTTCAGGCCGAGGATTGCTTTTTTGTGTATAGGATGGTGGTGGTATTGTTTAGAAGGGAGTTGACATTTGAACAGACTCTGTGTCTTTGGGAAGTAATGTGGGCTGATCAAGCAGCTATCAGGGCAGGTATTGGGAAATCTGCATGGAGCAGAATTAGGCAGCGTGCTCCACCAACAGACGATTTACTGCTTTATGCAATAGCAGCTTCAGTTTTACAGAAGAGGAAATTGATTATTGAGAAATATAGCAGCATGGACGAGATCATTAAGGAATGCAATGGCATGGCTGGACAACTTGATGTTTGGAAGCTGCTGGATGATGCCCATAATTTAGTAGTCACCCTTCATGACAAAATGAAAATAGACACATCTTTCCGATGA 1647 0.4529 MVVFIHSNNDTLFISGAGGARFSAMAAAASASTPAVLFTALAGLAIVAVIFYGVSRGRLKSPWSRRKRKRVLSPQQWKSLFTQDGRIRDGGIKFLKIIRSGGVDPSIRVEAWPFLLGVYELDSTKEEREAIRAQNRKEYEKLRRQCQQLLKQSNGSFKLNEIGEISYEGDGGSLVQDYGSPSLEDATSARESLSSEERSLDIEYSDDPSGALLEGDDAPNTSNADSSVPDTDSTDSDSSEGPEVIQTFPSDDGQEENNSKENVSSSQMKVPSKLWSNEDFATWQRIIRLDAVRANAEWMPYSPSQAVVADSRAHHSAEAVGLKDYGHLDSARIFHSARLVAILEAYALYDPEIGYCQGMSDLLSPIVSVISEDHEAFWCFVAFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDAHLFRHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLQKRKLIIEKYSSMDEIIKECNGMAGQLDVWKLLDDAHNLVVTLHDKMKIDTSFR* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0628 548 SMART tbc_4 99 485 IPR000195 -
Apr1g0628 548 MobiDBLite consensus disorder prediction 190 204 - -
Apr1g0628 548 MobiDBLite consensus disorder prediction 173 271 - -
Apr1g0628 548 ProSiteProfiles TBC/rab GAP domain profile. 102 459 IPR000195 -
Apr1g0628 548 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 258 391 - -
Apr1g0628 548 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 396 534 IPR035969 -
Apr1g0628 548 Coils Coil 121 152 - -
Apr1g0628 548 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 77 419 IPR035969 -
Apr1g0628 548 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE ISOFORM X1 11 540 - -
Apr1g0628 548 Pfam Rab-GTPase-TBC domain 338 458 IPR000195 -
Apr1g0628 548 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 11 540 - -
Apr1g0628 548 Gene3D - 395 542 - -
Apr1g0628 548 MobiDBLite consensus disorder prediction 219 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0628 Apr-Chr1 7575343 7580734 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0628 - - gmx:100793557 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0628 1 7575343 7580734 Apr1g0628 1 7575343 7580734 ECH