Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0603 ATGGCCACTCTCTTCAACTTCAACACTACTCTCAGCCCCTCTTGTTGTCTTCCCTCGTCATCTCATCAACTTGCTCCCTCACAATTCTCCAAGACACTATCAACAACTTTCTTTGCCCCAATCCAAAGCCTCAAACATGTTGCCACTGTCTCAACCAAACGTCGCCGTTCACTCTCCGTTCGCATGTCATGGGACGGTCCACTCTCATCCGTCAAATTGATCATACAGGGTAAAAATCTCGAGCTCACTGATGCAGTGAAGCAGCATGTGGAGGACAAGGTGGGGAAAGCTGTTCAGAAGCATAGTCATCTAGTGAGAGAGGTTGATGTGAGGCTATCTATCCGAGGAGGAGGAGAATTTGGGCGAGGACCCCGGACTCGTAGATGTGAGGTGACTTTGTTCACAAAGAGGCATGGAGTGGTGCGAGCTGAGGAAGATGCTGAAAGTACCTATGGAAGTATTGATTTGGTGTCATCGATCATTCAGAGAAAGTTGAGGAAGATAAAAGAAAAGGAGTCAGATCATGGTCGACACATGAAGGGGTTCAATAGGTTGAAGGTTAGGGAGCCCGTAGAGCCATTACCCTTGGAAGAGGACCAAATATCCCCACAGGAGGAGGAAGAATCAATTGATGAGGTTGTTCGCACAAAGTACTTTGACATGCCGCCATTGACTGTGGCTGAAGCAATTGAGCAGCTCGAAAATGTTGATCATGACTTTTATGGTTTTCGAAATGAAGAAACTGGGGAAATTAATATTGTGTACAAAAGAAAAGAAGGAGGTTACGGACTCATTATACCCAAAGGAGATGGTGAAGCAGAGAAATTGGAGCCTGTAGTAATTGAACCAGCTAAAGAACCCTCACTGAAAGAGTGA 876 0.4578 MATLFNFNTTLSPSCCLPSSSHQLAPSQFSKTLSTTFFAPIQSLKHVATVSTKRRRSLSVRMSWDGPLSSVKLIIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVEPLPLEEDQISPQEEEESIDEVVRTKYFDMPPLTVAEAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIIPKGDGEAEKLEPVVIEPAKEPSLKE* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0603 291 Gene3D - 72 176 IPR036567 -
Apr1g0603 291 TIGRFAM yfiA: ribosomal subunit interface protein 72 176 IPR003489 GO:0044238
Apr1g0603 291 Hamap Ribosome hibernation promoting factor [hpf]. 71 268 IPR034694 -
Apr1g0603 291 PANTHER 30S RIBOSOMAL PROTEIN 56 271 - -
Apr1g0603 291 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 211 264 IPR032528 -
Apr1g0603 291 CDD RaiA 72 171 IPR003489 GO:0044238
Apr1g0603 291 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 74 171 IPR003489 GO:0044238
Apr1g0603 291 Gene3D - 223 272 IPR038416 -
Apr1g0603 291 PANTHER 30S RIBOSOMAL PROTEIN 56 271 - -
Apr1g0603 291 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 72 178 IPR036567 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0603 - - gmx:100803327 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0603 1 7278234 7280367 Apr1g0603 1 7278234 7280367 ECH