Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0599 ATGGAGAATTCGACCCAAGAATCCCAAAACTCGGTGACCTACGAATCCCCATATCCAATATACGCAATAGCGTTCTCACAATCACAATCGCACCCTCAACGCCTCGCCCTCGGAAGCTTCATTGAAGAATACACAAACCGCGTCCACATCCTCTCCTTCAACCCCGACACCCTCTCCCTCAACCCTCACCCTTCTCTCTCCTTCGACCACCCTTACCCTCCCACCAAACTCATGTTCCACCCTTCTCCTTCCCCACCCTCCTCCAACCACCTCCTCGCCACCTCCGGTGACTACCTCCGCCTCTGGGAAGTCCGCGAATCCTCCGTCGATGCCCTCTCCCTCTTCAACAACAGCAAAACCAGCGAGTTCTGCGCCCCTCTCACCTCCTTCGACTGGAACGACGTCGACCCCAACCGCATCGCCACCTCCAGCATCGACACCACTTGCACTGTCTGGGACATTGAACGCGCTGTCGTCGAGACCCAACTCATCGCCCACGACAAAGAGGTGTACGACATCGCGTGGGGCCAAGCCAGAGTTTTTGCCTCTGTTTCCGCTGATGGGTCTGTTAGGATCTTCGATTTGAGAGACAAGGAACACTCCACCATTATCTACGAGAGCCCTCACCCTGATACCCCTTTGCTTCGTTTGGCTTGGAACAAACAGGACTTGAGGTACATGGCTACTATTTTGATGGATAGTAATAAAGTTGTGATTTTGGATATTAGATCGCCCACTACACCTGTGGCTGAGTTAGAGAGGCATCGTGGGGGCGTTAATGCTATTGCTTGGGCTCCTCATAGTTCTAGGCATATTTCTTCTGCTGGGGATGATACACATGCTCTTATTTGGGAGTTGCCTACTATGGCTGGTCCTAATGGCATTGATCCCATTTGCATGTATTCTGCTGCCTCTGAAATTAACCAGTTGCAGTGGTCTTCGGCTCAGCCTGATTGGATGGCCATTGCTTTTGCTAACAAGATGCAGCTTTTGAAAGTTTGA 1002 0.517 MENSTQESQNSVTYESPYPIYAIAFSQSQSHPQRLALGSFIEEYTNRVHILSFNPDTLSLNPHPSLSFDHPYPPTKLMFHPSPSPPSSNHLLATSGDYLRLWEVRESSVDALSLFNNSKTSEFCAPLTSFDWNDVDPNRIATSSIDTTCTVWDIERAVVETQLIAHDKEVYDIAWGQARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTTPVAELERHRGGVNAIAWAPHSSRHISSAGDDTHALIWELPTMAGPNGIDPICMYSAASEINQLQWSSAQPDWMAIAFANKMQLLKV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0599 333 SUPERFAMILY WD40 repeat-like 17 289 IPR036322 GO:0005515
Apr1g0599 333 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Apr1g0599 333 Pfam WD domain, G-beta repeat 163 194 IPR001680 GO:0005515
Apr1g0599 333 Pfam WD domain, G-beta repeat 248 284 IPR001680 GO:0005515
Apr1g0599 333 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 1 333 IPR031104 -
Apr1g0599 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 203 IPR001680 GO:0005515
Apr1g0599 333 Gene3D - 113 332 IPR015943 GO:0005515
Apr1g0599 333 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 286 IPR001680 GO:0005515
Apr1g0599 333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 286 - -
Apr1g0599 333 PANTHER WD REPEAT CONTAINING PROTEIN 1 333 IPR045159 -
Apr1g0599 333 SMART WD40_4 245 285 IPR001680 GO:0005515
Apr1g0599 333 SMART WD40_4 61 103 IPR001680 GO:0005515
Apr1g0599 333 SMART WD40_4 114 153 IPR001680 GO:0005515
Apr1g0599 333 SMART WD40_4 156 194 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0599 Apr-Chr1 7246178 7248772 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0599 K11805 - gmx:100804923 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0599 1 7246178 7248772 Apr1g0599 1 7246178 7248772 ECH