Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0588 ATGAGTGCATATTTGATCCCAGCCATTCATCTACTTGTGTTTCTGTCATGCACTTCCCTTTTAGCTGTGTTTAGCTGTGAGAATGATAAAGTGCATGCGAAAGAGATTCTTGGGGCAGCCCAGAAGGAAAAGGATTGGTTGGTTTCAGTGAGAAGGAAGGTCCATGAACACCCAGAACTGGCTTTTCAAGAACACAACACTAGTACTCTTATATGCTCCGAACTTGACAAACTTGGCATATCTTACACATACCCAGTTGCCAAAACCGGCATTGTTGCCCAAGTTGGCTCTGGTTCTCGCCCCATCATTGCTATTCGGGCTGACATGGATGCACTCCCCATGCAGGAGCTTGTTGAGTGGGAACAGAGCAAAATCGACGGCAGAATGCATGCATGTGGACACGATGCTCACACCACAATGCTACTTGGGGCTGCAAAGTTGCTGAATCAGCGGCAAAATAAGCTTCAGGGAACTGTGAGAATTCTTTTTCAACCCGCTGAGGAGGGAGCTAGAGGTGCGGCTCAAATGATAAAAGAAGGAGTTCTTCAAGATGCAGAAGCAATTTTTTCTGTTCATATTAGTACTATGACACCTACTGGAGTCATTGCATCCAGTGCGGGGCCTTTTACAGCTGCTGGATGCATGTTTGAGGCAAAAATTGTAGGAGTAGATGGTCATGCTGCAACACCGCACGAGAATATAGATCCAATTGTGGCTACATCATTTGCAATATTGGCACTACAACTGCTTGTCTCAAGGGAAAGTGATCCTCTTCACAGTCAAGTGGTATCAGTTACATATGTCAAAGGTGGAACTGCATTAAACGTGATCCCGTCCTATGTAAAATTTGGAGGCACTCTGAGGAGCCAGACAACTGAAGGCATGTATCATTTAAGGCAGCGATTAAAGGAGGTTATTGAAGCACAGGCAGTTGTGCACAGATGTAATTCTTATGTTGATTTCAAAGAAGAGGACTTCACCCCATATCCAGCTGTAGTTAATGACAAAAATTTGCATCTGCATGTGGAAAGAGTTGGTCAACTTTTGCTTGGTCCAGAAAATGTCCATGCAGGCAAAAGGGTGATGCCAGGTGAAGACTTTGCGTTTTATCAAGAAGTGATTCCCGGAATAATGTATTCCATTGGAATCAGAAATGAAAAAGTGGGAGCAATTCACTCCCCACACTCCCCTTTTTTCTTTCTTGATGAGGAAGTTCTTCCATTAGGGGCAGCTCTTCACACTGCTGTTGCTGAGTTATATTTAAATGAGCATAAGCATACTGTTTAG 1287 0.4398 MSAYLIPAIHLLVFLSCTSLLAVFSCENDKVHAKEILGAAQKEKDWLVSVRRKVHEHPELAFQEHNTSTLICSELDKLGISYTYPVAKTGIVAQVGSGSRPIIAIRADMDALPMQELVEWEQSKIDGRMHACGHDAHTTMLLGAAKLLNQRQNKLQGTVRILFQPAEEGARGAAQMIKEGVLQDAEAIFSVHISTMTPTGVIASSAGPFTAAGCMFEAKIVGVDGHAATPHENIDPIVATSFAILALQLLVSRESDPLHSQVVSVTYVKGGTALNVIPSYVKFGGTLRSQTTEGMYHLRQRLKEVIEAQAVVHRCNSYVDFKEEDFTPYPAVVNDKNLHLHVERVGQLLLGPENVHAGKRVMPGEDFAFYQEVIPGIMYSIGIRNEKVGAIHSPHSPFFFLDEEVLPLGAALHTAVAELYLNEHKHTV* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0588 428 TIGRFAM amidohydrolases: amidohydrolase 47 409 IPR017439 GO:0016787
Apr1g0588 428 Pfam Peptidase dimerisation domain 216 311 IPR011650 -
Apr1g0588 428 SUPERFAMILY Zn-dependent exopeptidases 35 423 - -
Apr1g0588 428 Gene3D - 211 329 - -
Apr1g0588 428 PANTHER PEPTIDASE M20 FAMILY MEMBER 9 427 IPR017439 GO:0016787
Apr1g0588 428 Gene3D Zn peptidases 48 406 - -
Apr1g0588 428 CDD M20_IAA_Hyd 47 421 IPR044757 GO:0009850|GO:0016787
Apr1g0588 428 SUPERFAMILY Bacterial exopeptidase dimerisation domain 215 320 IPR036264 -
Apr1g0588 428 Pfam Peptidase family M20/M25/M40 104 416 IPR002933 GO:0016787
Apr1g0588 428 PIRSF Amidohydrol_AmhX 32 425 IPR017439 GO:0016787
Apr1g0588 428 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 3 9 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0588 Apr-Chr1 7135368 7140608 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0588 K14664 - gmx:100777587 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0588 1 7135368 7140608 Apr1g0588 1 7135368 7140608 ECH