Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0539 ATGGCGAAGCAGAAACATCTCAACACTCTTTTCATGCAATTGCTCATTCTCTTCTTCTGTGCTTTCTCTGTTTCGGTTTCTGCGAGAATCGTGCCTCTGTTGCAGAGCTATGCGAAACCCATTTTCAGAGCAAACTTTCACACTGTTTACGACACTTCAAAATACGGTGTGTTTCAACTGAGTAATGGGTTGGCTCAAACACCTCAGATGGGATGGAATAGCTGGAACTTCTTCGCGTGCAATATCAATGAAACGGTCATTAAGGAAACTGCTGATGCACTAGTATCAACGGGGTTGGCTGATTTAGGTTATGTGTACGTCAACATAGGAATCAAAGCTATAGCAGATTATGTACATGAAAAGGGACTAAAGCTTGGCATATATTCTAGTGCTGGGGTTTTTACATGTCAAGTCCGGCCAGGATCGCTTTTCTATGAAGGTGGTGATGCAGATTTATTTGCTTCTTGGGGTGTAGATTATTTGAAGTATGACAATTGCTTCAATCTGAACATCCCTGCAAAGAAACGTTATCCTCCTATGCGTGATGCTCTCAATGCAACAGGGCACAAAATTTTCTATTCAATCTGTGAATGGGGTGTTGATGATCCCGCCTTGTGGGCAGACAAGGTTGGTAACAGTTGGCGCACAACCGAAGACATCAATGATTCATGGGCAAGCATGACAACCATTGCTGATCTTAATGATAAGTGGGCTGCATATGCTGGTCCAGGAGGATGGAATGACCCAGATATGTTGGAAGTTGGCAATGGTGGCATGACTTACCAGGAATACCGTGCTCACTTCAGCATATGGGCTTTAGCAAAGGCTCCTCTATTGATTGGTTGTGATGTAAGAAATTTGACTCCTGAAACACTTGAGATTTTGAGCAATAAAGAAGTCATTGCAATAAACCAAGACTCACTTGGAGTCCAGGGAAGGAAAGTTCAAATTGCTGGAGCAGATGGCTGCAGACAGGTTTGGGCAGGCCCTTTGTCAGGAAATCGATTGGTTGTTGCTCTCTGGAATCGGTGTACAAAAGTTGCTACTGTAACAGCTTCATGGGAAGCACTTGGGCTTGAATCTGGGGTTCATGTTTCTGTGAGGGATTTGTGGCAGCACAAGGTAGTAACTGAAGATGCAGTGTCATCATTCAGTGCTCGAGTTGATATTCACGACTGTCAACTGTACATTTTCACTCCATTTACAGTATCTCACTCTGTAGAGTAG 1227 0.436 MAKQKHLNTLFMQLLILFFCAFSVSVSARIVPLLQSYAKPIFRANFHTVYDTSKYGVFQLSNGLAQTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYVYVNIGIKAIADYVHEKGLKLGIYSSAGVFTCQVRPGSLFYEGGDADLFASWGVDYLKYDNCFNLNIPAKKRYPPMRDALNATGHKIFYSICEWGVDDPALWADKVGNSWRTTEDINDSWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLIGCDVRNLTPETLEILSNKEVIAINQDSLGVQGRKVQIAGADGCRQVWAGPLSGNRLVVALWNRCTKVATVTASWEALGLESGVHVSVRDLWQHKVVTEDAVSSFSARVDIHDCQLYIFTPFTVSHSVE* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0539 408 CDD GH27 68 306 IPR002241 GO:0004553|GO:0005975
Apr1g0539 408 SUPERFAMILY Glycosyl hydrolase domain 301 399 - -
Apr1g0539 408 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 44 399 IPR002241 GO:0004553|GO:0005975
Apr1g0539 408 SUPERFAMILY (Trans)glycosidases 60 306 IPR017853 -
Apr1g0539 408 Pfam Alpha galactosidase C-terminal beta sandwich domain 322 397 IPR041233 -
Apr1g0539 408 Gene3D - 309 401 IPR013780 -
Apr1g0539 408 Pfam Alpha galactosidase A 110 306 IPR002241 GO:0004553|GO:0005975
Apr1g0539 408 Pfam Alpha galactosidase A 67 109 IPR002241 GO:0004553|GO:0005975
Apr1g0539 408 PANTHER ALPHA-GALACTOSIDASE 3 44 399 - -
Apr1g0539 408 PRINTS Glycosyl hydrolase family 27 signature 62 81 IPR002241 GO:0004553|GO:0005975
Apr1g0539 408 PRINTS Glycosyl hydrolase family 27 signature 262 283 IPR002241 GO:0004553|GO:0005975
Apr1g0539 408 Gene3D Aldolase class I 60 308 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0539 Apr-Chr1 6573656 6581345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0539 1 406 Glycoside Hydrolase AT3G56310 73.039 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0539 K07407 - gmx:100784072 743.036