Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0535 ATGGCCGTGCGAGCCCTATTGAGCAGAAAAACCCTAGCCTCCGTGCTCCGCAATGACGCAAAGCCAATCGGAGTTGCCGTAGCCGCAGCTTCAGCAACTCATTCCCGCGGCTTGCATGTCTACACGCTTCCCGATCTCGATTACGACTACGGCGCCCTGGAGCCAGCCATAAGTGGCGAAATCATGCAGCTGCACCACCAGAAGCACCATCAGACTTACATCACCAATTACAACAAGGCTCTTGAGCAGCTTCATGATGCCATCGCCAAGGCCGATTCCTCTTCCATCGTTAAGCTCCAGAGTGCCATCAAGTTCAATGGCGGAGGTCATATCAACCATTCTATTTTCTGGAAAAATCTGGCTCCTGTTCGTGAAGGAGGTGGTGAACCACCCAAGGGTTCCCTGGGATGGGCCATTGACACACATTTTGGTTCTTTAGAAGCATTAATACAAAAAGTTAATGCTGAAGGTGCAGCGCTACAGGGGTCTGGATGGGTGTGGCTTGGTCTGGACAAAGAGTTGAAGAGGCTTGTGGTTGAAACTACTGGCAACCAGGACCCACTGGTTACTAAGGGACCAAATTTGGTTCCATTGCTTGGAATTGATGTTTGGGAGCATGCATACTACTTACAGTACAAGAATGTTAGACCAGACTATCTGAAGAATATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTGTATGAGAAAGAGAGCTCTTAG 726 0.4835 MAVRALLSRKTLASVLRNDAKPIGVAVAAASATHSRGLHVYTLPDLDYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLHDAIAKADSSSIVKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTHFGSLEALIQKVNAEGAALQGSGWVWLGLDKELKRLVVETTGNQDPLVTKGPNLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0535 241 PRINTS Manganese superoxide dismutase signature 44 55 IPR001189 GO:0004784|GO:0006801|GO:0046872
Apr1g0535 241 PRINTS Manganese superoxide dismutase signature 65 78 IPR001189 GO:0004784|GO:0006801|GO:0046872
Apr1g0535 241 PRINTS Manganese superoxide dismutase signature 104 117 IPR001189 GO:0004784|GO:0006801|GO:0046872
Apr1g0535 241 PRINTS Manganese superoxide dismutase signature 160 168 IPR001189 GO:0004784|GO:0006801|GO:0046872
Apr1g0535 241 PRINTS Manganese superoxide dismutase signature 200 212 IPR001189 GO:0004784|GO:0006801|GO:0046872
Apr1g0535 241 Gene3D - 122 241 IPR036314 -
Apr1g0535 241 PANTHER SUPEROXIDE DISMUTASE 33 240 - -
Apr1g0535 241 Gene3D Fe,Mn superoxide dismutase (SOD) domain 58 121 IPR036324 -
Apr1g0535 241 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 126 238 IPR036314 -
Apr1g0535 241 Pfam Iron/manganese superoxide dismutases, C-terminal domain 131 233 IPR019832 GO:0004784|GO:0006801|GO:0046872
Apr1g0535 241 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 41 121 IPR019831 GO:0004784|GO:0006801|GO:0046872
Apr1g0535 241 PANTHER SUPEROXIDE DISMUTASE 2 33 240 - -
Apr1g0535 241 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 38 122 IPR036324 -
Apr1g0535 241 PIRSF MnSOD_FeSOD 15 241 IPR001189 GO:0004784|GO:0006801|GO:0046872
Apr1g0535 241 ProSitePatterns Manganese and iron superoxide dismutases signature. 202 209 IPR019833 GO:0004784|GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0535 Apr-Chr1 6545970 6551028 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0535 K04564 - gmx:100785490 461.455